Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011391.1 Corchorus capsularis cultivar CVL-1 contig11412, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2649
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26


Found at i:122 original size:13 final size:13

Alignment explanation


    Indices: 104--128  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

         94 AAAGTTTGAA

                         
        104 AATACAAAAAAAT
          1 AATACAAAAAAAT

                        
        117 AATACAAAAAAA
          1 AATACAAAAAAA

        129 AAGAGAGAAC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12


Consensus pattern (13 bp):   
AATACAAAAAAAT
Done.