Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011398.1 Corchorus capsularis cultivar CVL-1 contig11419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27459

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6022--6070
2
24.0
2
83
4
62
42
8
0
48
1.32
8088--8152
23
2.9
22
79
4
67
40
15
12
32
1.84
8182--8237
22
2.5
22
82
2
67
41
10
10
37
1.75
8204--8513
22
14.5
22
69
16
125
34
16
9
40
1.80
8202--8305
46
2.3
45
81
6
122
40
14
6
38
1.72
8463--8513
19
2.6
20
81
6
68
23
15
13
47
1.82
8624--8864
22
11.0
22
68
12
113
33
13
8
44
1.74
8593--8759
88
1.9
88
80
9
198
34
11
9
44
1.73
8748--8921
22
7.7
23
69
20
93
36
13
9
40
1.77
8884--8980
22
4.4
22
69
10
72
39
16
10
34
1.83
9055--9096
22
1.9
22
90
0
66
42
23
7
26
1.80
9102--9276
22
8.0
22
85
6
187
36
16
12
36
1.85
9103--9229
66
1.9
66
93
0
218
36
13
13
37
1.84
9545--9610
31
2.1
31
86
5
89
50
3
18
28
1.62
9941--10003
31
2.0
32
87
6
92
38
19
1
41
1.61
12175--12306
68
2.0
65
86
4
183
39
12
24
24
1.89
20225--20306
42
2.0
42
92
0
137
17
21
17
43
1.87

Tables:   1

The End!