genome.fa.s11400.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011400.1 Corchorus capsularis cultivar CVL-1 contig11421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38740

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118--1464	331	4.1	327	76	8	1113	36	14	15	33	1.88
1821--1850	15	1.9	16	93	6	53	53	3	0	43	1.17
1946--2009	32	2.0	32	82	11	78	53	3	6	37	1.42
6212--6252	19	2.3	19	87	8	59	34	17	12	36	1.87
10869--10952	41	2.0	41	93	0	141	28	14	19	38	1.90
12072--15034	330	9.0	330	76	9	2218	33	13	15	36	1.87
12072--15034	648	4.5	647	76	10	2377	33	13	15	36	1.87
15538--15705	22	7.7	22	69	11	85	34	11	10	42	1.76
15667--15752	45	1.9	45	81	9	104	40	13	10	34	1.80
15791--15883	23	4.1	22	74	9	80	43	10	4	41	1.59
15802--15883	23	3.6	23	80	4	96	43	8	4	42	1.56
15802--15905	45	2.3	45	81	3	120	41	9	5	43	1.61
15621--16074	22	20.8	22	67	14	113	38	13	8	39	1.76
15914--16073	44	3.6	44	77	12	141	34	13	9	42	1.77
16065--16131	19	3.5	19	85	2	89	23	20	11	43	1.85
16199--16342	44	3.3	43	73	16	125	32	11	9	46	1.72
16229--16451	22	10.1	22	71	12	145	33	13	8	44	1.75
16199--16364	88	1.9	88	82	5	210	34	11	9	44	1.73
16647--16852	22	9.3	22	79	5	119	37	17	10	33	1.85
16701--16807	44	2.4	44	88	0	160	35	15	14	34	1.88
17128--17192	30	2.1	31	94	2	114	47	4	20	27	1.69
17582--17642	31	2.0	31	100	0	122	19	14	22	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21188--21230	22	2.0	22	95	0	77	23	11	16	48	1.78
23894--25493	317	4.9	317	76	9	967	36	16	13	33	1.87
26696--27472	328	2.3	326	81	6	859	37	14	14	33	1.87
32829--32889	23	2.5	23	84	10	68	26	14	3	55	1.55
37852--37896	22	2.0	22	83	8	56	40	8	4	46	1.55
37747--37925	93	1.9	95	86	6	256	32	8	4	54	1.52

Tables:   1

The End!