genome.fa.s11409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011409.1 Corchorus capsularis cultivar CVL-1 contig11430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148047

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955--1028	38	1.9	38	81	13	89	37	14	4	43	1.65
3274--3307	2	17.0	2	93	0	59	47	0	2	50	1.16
4412--4883	22	21.6	22	69	11	179	36	14	8	40	1.78
4673--4757	23	3.7	23	84	1	100	37	14	9	38	1.78
5048--5127	22	3.6	22	72	9	74	32	12	11	43	1.78
5298--5352	22	2.5	23	82	11	71	38	14	5	41	1.69
5313--5363	22	2.3	22	80	6	59	41	17	7	33	1.79
5347--5389	22	2.0	22	85	0	59	39	20	6	32	1.80
5510--5755	22	11.3	22	70	13	134	33	14	9	41	1.79
5001--5903	463	2.0	462	92	2	1526	35	13	9	40	1.77
8016--8065	26	1.9	26	84	8	66	48	18	6	28	1.71
11638--11681	18	2.4	18	96	0	79	4	27	47	20	1.69
12388--12426	6	6.7	6	88	5	53	2	17	17	61	1.46
22573--22602	13	2.3	13	94	0	51	0	10	0	90	0.47
31618--31648	2	16.0	2	93	6	55	48	0	0	51	1.00
31644--31674	14	2.2	14	100	0	62	48	6	0	45	1.28
32450--32612	81	2.0	81	100	0	326	26	25	15	31	1.95
53973--53997	12	2.1	12	100	0	50	44	8	16	32	1.76
55761--55791	16	1.9	16	100	0	62	38	16	19	25	1.92
57758--57814	29	2.0	29	92	0	96	14	36	17	31	1.89
63975--64007	16	2.1	16	100	0	66	27	18	12	42	1.85
74276--74403	63	2.0	63	95	0	229	18	17	10	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74821--74898	38	2.1	38	85	0	102	25	19	29	25	1.98
77407--77436	12	2.5	12	88	0	51	33	0	30	36	1.58
78281--78513	70	3.2	70	82	11	281	37	12	0	49	1.44
78281--78519	78	3.2	77	87	8	325	37	12	0	50	1.43
81107--81257	75	2.0	75	98	0	293	21	7	22	47	1.76
82131--82188	19	3.1	19	100	0	116	15	5	31	48	1.67
85469--85513	24	1.9	23	90	4	72	75	0	15	8	1.03
85618--85912	109	2.6	108	89	5	428	37	11	1	49	1.48
85822--85855	18	1.9	18	88	5	52	41	11	0	47	1.40
87631--87814	48	3.8	46	76	11	156	21	14	17	46	1.83
87661--87792	49	2.7	48	80	8	151	19	13	19	46	1.83
88031--88131	48	2.1	48	81	3	114	24	12	16	45	1.83
88127--88208	39	2.1	38	84	6	103	24	9	18	47	1.78
89431--89456	2	13.0	2	100	0	52	50	0	0	50	1.00
90115--90206	32	2.9	32	81	3	96	32	20	21	25	1.98
90145--90207	32	2.0	32	90	0	99	31	23	22	22	1.98
95810--95836	2	13.5	2	100	0	54	48	0	0	51	1.00
96684--96757	29	2.5	29	84	6	96	18	31	14	35	1.92
96913--96986	29	2.5	30	76	8	89	35	16	29	18	1.93
98408--98446	20	1.9	21	89	5	62	28	15	25	30	1.96
98401--98462	21	3.0	21	81	6	65	27	14	25	32	1.95
108819--108846	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114023--114330	115	2.7	115	96	1	564	19	14	15	50	1.78
119489--119550	28	2.2	28	94	0	106	43	9	11	35	1.73
124742--125000	140	1.9	139	86	2	376	40	18	10	30	1.84
126866--126948	21	3.8	21	71	25	66	56	1	2	39	1.20
126884--126936	18	2.7	20	83	13	65	58	1	3	35	1.27
132314--132344	2	15.5	2	100	0	62	51	0	0	48	1.00
132394--132489	31	3.1	29	73	8	84	36	8	13	41	1.75
137165--137250	31	2.6	32	87	10	120	19	19	5	54	1.64
137416--137474	24	2.5	24	74	20	61	13	13	5	67	1.38

Tables:   1

The End!