Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011412.1 Corchorus capsularis cultivar CVL-1 contig11433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108363

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--28
2
14.0
2
100
0
56
50
0
0
50
1.00
3820--3855
8
4.5
8
86
13
56
63
0
0
36
0.94
3818--3852
11
3.2
11
92
8
54
62
0
0
37
0.95
4618--4692
38
2.0
38
94
0
132
32
12
9
46
1.73
13999--14036
19
2.0
19
100
0
76
31
15
0
52
1.43
19514--19617
51
2.0
51
96
0
190
31
23
20
25
1.98
26794--26864
37
1.9
37
82
5
90
21
23
22
32
1.98
37033--37360
40
8.2
40
95
0
539
33
6
28
30
1.82
39712--43270
329
10.8
326
74
10
2330
36
14
14
34
1.87
39712--43272
646
5.4
641
75
10
2666
36
14
14
34
1.87
43818--43847
15
1.9
16
93
6
53
53
3
0
43
1.17
45536--45703
82
2.0
83
87
2
239
30
31
28
9
1.89
45803--45832
2
15.5
2
93
6
53
50
0
50
0
1.00
53595--53687
46
2.0
46
100
0
186
18
36
17
27
1.93
53646--53703
30
2.0
29
93
3
98
15
29
24
31
1.95
55713--55739
2
13.5
2
100
0
54
48
0
0
51
1.00
70578--70652
30
2.5
31
82
6
91
29
26
16
28
1.96
71441--71507
31
2.2
31
84
7
84
25
17
26
29
1.98
72464--72533
35
2.0
35
94
0
122
28
37
5
28
1.80
79334--79364
2
15.5
2
93
0
53
51
0
0
48
1.00
96900--96939
2
21.0
2
85
10
57
50
0
2
47
1.14
97756--97815
4
15.0
4
96
0
111
25
1
25
48
1.61

Tables:   1

The End!