Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011418.1 Corchorus capsularis cultivar CVL-1 contig11439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60032

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5160--5293
39
3.4
39
95
0
214
47
6
33
12
1.68
5467--5512
23
2.0
23
86
0
65
41
6
19
32
1.77
7879--7932
19
2.7
21
74
11
58
3
12
7
75
1.14
7892--7921
14
2.2
14
94
5
53
0
10
0
90
0.47
13955--13996
21
2.0
21
95
0
75
33
30
16
19
1.94
16473--17323
334
2.6
330
83
4
1047
36
15
14
33
1.88
18666--19802
338
3.4
326
80
7
1158
36
14
14
33
1.87
23198--23254
28
2.0
28
96
0
105
17
45
17
19
1.86
23369--23666
98
3.1
98
92
0
490
35
26
11
26
1.90
30614--30692
39
2.1
39
85
2
106
43
13
11
31
1.80
31288--31346
22
2.7
21
80
15
66
44
3
3
49
1.36
35665--35695
15
2.1
15
93
0
53
77
0
0
22
0.77
36098--36176
38
2.0
39
85
4
106
24
20
15
40
1.90
41897--41954
26
2.2
25
77
14
64
48
15
10
25
1.77
45134--45186
27
2.0
27
92
0
88
11
28
3
56
1.51
56361--56394
17
2.0
17
88
0
50
26
2
0
70
1.01
58277--58332
27
2.1
27
100
0
112
37
3
10
48
1.56
58286--58338
27
2.1
24
86
13
72
35
3
9
50
1.53

Tables:   1

The End!