Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011419.1 Corchorus capsularis cultivar CVL-1 contig11440, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29285

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1178--1210
12
2.5
13
90
9
50
9
15
0
75
1.03
1285--1355
28
2.5
28
88
0
97
36
4
18
40
1.70
6518--6621
33
2.9
35
87
12
167
43
17
5
33
1.73
6518--6621
38
2.9
35
91
8
167
43
17
5
33
1.73
6877--6931
24
2.3
24
87
0
74
23
38
0
38
1.55
6882--6939
18
3.2
18
80
0
62
20
37
0
41
1.53
6901--6964
24
2.9
22
82
11
76
21
37
0
40
1.54
6922--6980
27
2.2
27
85
11
77
23
38
0
37
1.55
6900--6979
24
3.3
23
74
22
67
22
37
0
40
1.54
6936--7052
39
3.2
39
81
15
133
24
38
0
35
1.62
7067--7114
24
2.1
22
88
11
71
16
31
4
47
1.65
7571--7640
34
2.1
34
97
0
131
58
14
21
5
1.57
9745--9888
31
4.8
31
75
6
152
18
20
25
36
1.95
9719--9888
62
2.8
60
84
7
227
20
20
24
35
1.95
9745--9886
58
2.4
60
88
4
207
18
20
24
36
1.95
11120--11249
48
2.7
47
78
5
118
39
23
14
22
1.91
11932--12043
49
2.3
49
82
1
145
34
25
16
22
1.95
13981--14006
2
13.0
2
100
0
52
0
0
50
50
1.00
14301--14343
22
1.9
23
90
4
70
18
9
4
67
1.36
15826--16307
165
2.9
163
80
5
563
37
15
16
31
1.90
16475--16519
23
2.0
23
86
0
63
24
11
26
37
1.89
18135--18178
21
2.1
21
100
0
88
38
9
13
38
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19173--19268
48
2.0
47
97
2
183
35
14
10
39
1.80
19958--19989
15
2.1
15
94
0
55
28
21
15
34
1.94
22548--22575
2
14.0
2
100
0
56
50
0
0
50
1.00
23000--23153
49
3.2
49
79
5
152
34
26
17
21
1.95
24865--24936
37
1.9
37
85
2
99
37
23
23
15
1.93

Tables:   1

The End!