Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011420.1 Corchorus capsularis cultivar CVL-1 contig11441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61619

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89--356
93
2.8
93
87
3
378
15
11
33
39
1.83
3613--3655
22
2.0
21
86
4
59
27
20
20
30
1.98
4892--4933
21
2.0
21
100
0
84
19
19
23
38
1.93
4988--5021
15
2.3
15
89
0
50
29
2
26
41
1.70
5972--6000
2
15.0
2
92
7
51
51
0
0
48
1.00
6134--6198
32
2.0
32
100
0
130
27
18
24
29
1.98
8226--8283
22
2.5
24
83
5
75
41
8
10
39
1.70
8482--8550
22
3.1
22
91
0
111
39
14
11
34
1.82
9239--9305
32
2.1
32
88
2
100
49
2
17
29
1.62
17356--17411
27
2.1
27
86
6
78
25
16
12
46
1.81
25035--25164
59
2.2
59
98
0
251
34
8
18
38
1.81
25390--29116
321
11.4
322
74
11
2212
37
14
14
33
1.87
40169--40580
166
2.5
165
85
6
528
30
14
16
39
1.88
46085--46403
173
1.8
173
92
4
545
34
12
15
37
1.85
50583--50609
12
2.2
12
100
0
54
51
0
22
25
1.48
59306--59337
1
32.0
1
100
0
64
100
0
0
0
0.00

Tables:   1

The End!