Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011421.1 Corchorus capsularis cultivar CVL-1 contig11442, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 54121
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:4325 original size:13 final size:14

Alignment explanation


    Indices: 4302--4330  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

       4292 ATAAGTATAG

                          
       4302 TTTCAAAATTACAA
          1 TTTCAAAATTACAA

                          
       4316 TTTC-AAATTACAA
          1 TTTCAAAATTACAA

              
       4329 TT
          1 TT

       4331 GGAAATTTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.73
  14    4  0.27

ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41


Consensus pattern (14 bp):   
TTTCAAAATTACAA

Found at i:6520 original size:2 final size:2

Alignment explanation


    Indices: 6513--6543  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       6503 AGGAAAAACA

                                                          
       6513 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       6544 GTCAATTCAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.