Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011423.1 Corchorus capsularis cultivar CVL-1 contig11444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91654

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--60
2
30.0
2
100
0
120
0
50
0
50
1.00
3007--3096
45
2.0
45
86
4
128
45
21
20
13
1.84
4379--4403
13
1.9
13
100
0
50
32
20
16
32
1.94
5561--5872
63
5.0
63
94
1
554
32
16
31
19
1.94
6880--7464
291
2.0
291
98
0
1125
29
27
18
25
1.98
8339--8676
78
4.4
77
84
5
402
30
28
19
21
1.98
14073--14224
76
2.0
74
82
5
180
30
21
17
30
1.96
29533--29682
48
3.1
48
91
0
228
28
30
20
20
1.98
35485--35517
15
2.3
15
90
10
52
0
15
0
84
0.61
38607--38667
30
2.1
30
81
3
70
29
11
9
49
1.71
39665--39692
2
14.0
2
100
0
56
50
0
0
50
1.00
40165--40207
21
2.0
21
100
0
86
23
32
9
34
1.87
40569--40678
33
3.4
31
80
16
102
11
40
35
11
1.79
40596--40680
33
2.6
32
85
5
116
11
43
32
11
1.78
41701--41753
25
2.1
26
86
10
74
56
1
0
41
1.10
41848--41908
29
2.1
30
87
3
88
42
3
3
50
1.34
52848--52876
14
2.1
14
100
0
58
44
6
27
20
1.77
54598--54624
3
9.0
3
100
0
54
0
33
0
66
0.92
55641--55675
17
2.1
17
94
0
61
45
11
8
34
1.71
67777--67803
2
13.5
2
100
0
54
48
0
0
51
1.00
81664--81710
18
2.7
18
83
9
62
29
25
8
36
1.86
81523--81727
102
2.0
101
88
5
306
32
26
16
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81820--81859
15
2.7
15
100
0
80
42
15
25
17
1.88
88642--88683
22
1.9
22
95
0
75
28
26
11
33
1.92
89772--89800
13
2.1
14
93
6
51
31
20
6
41
1.79

Tables:   1

The End!