Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011425.1 Corchorus capsularis cultivar CVL-1 contig11446, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24575

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--108
32
2.6
32
87
3
109
12
40
39
6
1.70
5225--5305
38
2.1
38
100
0
162
18
25
24
30
1.98
6600--6643
7
6.3
7
100
0
88
27
29
0
43
1.55
10499--10537
19
2.1
19
100
0
78
15
23
20
41
1.90
12658--14837
333
6.7
329
78
10
1785
37
15
14
33
1.87
14543--15134
297
2.0
296
82
4
719
35
16
13
34
1.87
14850--16768
332
5.9
332
76
10
1528
36
15
13
33
1.87
15355--16768
661
2.2
646
81
6
1584
37
14
13
34
1.85
20601--20642
21
2.0
21
95
0
75
33
21
19
26
1.97
22992--23125
42
3.4
41
66
26
119
23
14
32
29
1.94
23025--23082
16
3.6
16
90
4
91
29
17
25
27
1.97
22994--23140
74
2.0
74
94
0
258
24
14
32
28
1.94
23023--23095
32
2.3
32
78
4
85
26
15
30
28
1.96
23099--23172
16
4.6
16
81
9
80
24
14
29
31
1.95
23057--23137
42
1.9
42
87
5
119
22
13
35
28
1.92
22994--23169
74
2.4
74
89
1
246
24
14
32
28
1.94
23099--23174
32
2.4
31
86
4
98
25
14
28
31
1.95
23598--23677
23
3.5
22
73
19
65
27
30
30
12
1.93
24263--24375
33
3.4
33
86
4
131
23
22
32
22
1.98
24294--24348
15
3.5
15
74
13
56
20
23
38
18
1.93
24276--24336
18
3.6
18
76
13
65
21
22
36
19
1.95

Tables:   1

The End!