Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011426.1 Corchorus capsularis cultivar CVL-1 contig11447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64327

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
938--1018
36
2.2
36
91
4
128
25
27
32
14
1.95
949--1026
36
2.2
36
90
0
120
28
28
29
14
1.95
2906--2994
16
5.6
16
85
9
112
28
16
25
29
1.97
2879--3086
105
2.0
105
89
1
319
25
12
31
30
1.93
2923--3007
16
5.4
15
87
8
71
25
14
29
30
1.95
2906--2994
32
2.8
32
93
1
144
28
16
25
29
1.97
3011--3084
16
4.6
16
81
9
80
24
14
29
31
1.95
2970--3049
42
1.9
41
84
2
106
21
11
36
31
1.88
2938--3081
73
2.0
74
90
1
227
23
13
31
30
1.94
2907--3086
32
5.9
31
78
11
99
25
15
28
30
1.95
4312--4583
146
1.9
147
86
6
392
30
16
17
36
1.92
4789--4845
26
2.2
26
80
0
69
36
1
12
49
1.51
7606--7642
3
12.3
3
100
0
74
67
0
32
0
0.91
11137--11185
17
2.9
16
85
8
62
22
20
22
34
1.97
11437--11494
24
2.4
25
77
8
66
3
24
0
72
1.00
12710--12786
38
2.0
38
94
0
136
35
18
5
41
1.73
13325--14566
330
3.8
321
76
8
1030
38
15
12
33
1.85
13325--14607
664
1.9
660
79
6
1412
38
15
12
33
1.85
15524--17759
332
6.7
332
75
10
1189
36
15
14
34
1.87
18143--18172
15
1.9
16
93
6
53
53
6
0
40
1.27
19359--19420
21
2.9
22
74
13
58
41
1
0
56
1.09
19510--19547
18
2.2
17
90
4
58
23
50
13
13
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19985--20070
45
2.0
42
93
6
145
43
5
16
34
1.72
26923--26993
29
2.4
29
83
0
88
39
26
11
22
1.88
28871--29003
65
2.0
66
97
1
250
21
12
27
39
1.88
30118--30146
3
9.7
3
100
0
58
0
31
0
68
0.89
31539--31610
35
2.1
35
100
0
144
41
11
19
27
1.85
37892--37967
36
2.1
36
97
2
145
13
25
2
59
1.47
37898--37959
21
3.2
21
61
25
55
14
24
3
58
1.51
55501--55535
12
2.8
13
91
8
63
85
0
14
0
0.59
55503--55543
14
3.2
13
83
10
57
85
0
14
0
0.60
58612--58643
6
5.7
6
92
7
50
84
0
15
0
0.63
58612--58644
10
3.0
11
91
8
50
81
0
18
0
0.68
64061--64106
23
2.0
23
91
4
74
80
0
19
0
0.71
64061--64099
11
3.5
11
79
6
51
84
0
15
0
0.62

Tables:   1

The End!