Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011429.1 Corchorus capsularis cultivar CVL-1 contig11450, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8072
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31


Found at i:3731 original size:21 final size:21

Alignment explanation


    Indices: 3693--3735  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3683 TTATTCACTA

                                 
       3693 ATTAAAACAATCAAATAAAGC
          1 ATTAAAACAATCAAATAAAGC

                          *       
       3714 ATTAAGAACAAT-AGATAAAGC
          1 ATTAA-AACAATCAAATAAAGC

             
       3735 A
          1 A

       3736 AGCATAAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  21   14  0.70
  22    6  0.30

ACGTcount: A:0.60, C:0.12, G:0.09, T:0.19


Consensus pattern (21 bp):   
ATTAAAACAATCAAATAAAGC
Done.