Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011434.1 Corchorus capsularis cultivar CVL-1 contig11455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25827

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2503--2537
10
3.5
10
92
7
54
11
0
0
88
0.51
2502--2528
9
3.0
9
100
0
54
11
0
0
88
0.50
3559--3643
42
2.0
42
86
0
116
9
23
42
24
1.84
5084--5151
31
2.3
30
83
14
88
51
5
11
30
1.62
5145--5518
50
7.3
51
89
3
506
37
6
16
39
1.74
5145--5555
203
2.0
202
83
6
517
37
6
16
38
1.74
5145--5555
103
4.0
101
86
4
362
37
6
16
38
1.74
6365--6572
71
2.9
70
85
5
249
48
6
17
27
1.72
6390--6569
34
5.1
35
70
21
142
48
5
18
27
1.70
6366--6497
34
3.8
34
77
15
135
48
6
16
28
1.72
6490--6556
32
2.1
31
83
10
82
47
5
19
26
1.72
6934--7096
30
5.8
28
71
19
108
53
4
20
20
1.62
6985--7096
58
2.0
55
84
8
145
55
5
19
19
1.62
6934--7096
26
5.8
26
73
12
119
53
4
20
20
1.62
12722--12848
18
7.1
18
81
3
121
23
43
21
11
1.85
12725--12848
54
2.3
54
80
0
140
23
42
21
12
1.86
14052--14150
30
3.3
30
71
0
90
30
27
25
17
1.97
14049--14166
60
2.0
60
86
0
164
32
26
25
16
1.96
18864--18913
17
3.1
17
75
16
52
54
2
38
6
1.37
19723--19759
17
2.1
18
90
5
58
27
13
35
24
1.93
22155--22569
183
2.3
182
81
5
478
35
17
16
30
1.93

Tables:   1

The End!