Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011437.1 Corchorus capsularis cultivar CVL-1 contig11458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33896

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
949--979
2
15.5
2
100
0
62
51
0
0
48
1.00
1447--1514
25
2.9
25
67
20
65
27
19
8
44
1.80
1447--1518
26
3.0
26
67
17
66
29
18
8
44
1.78
2849--2999
72
2.1
72
85
3
207
23
7
23
45
1.77
4751--4787
2
18.5
2
88
0
56
45
2
0
51
1.15
12928--12971
3
14.7
3
100
0
88
31
0
0
68
0.90
16964--16988
13
1.9
13
100
0
50
20
8
32
40
1.81
17260--17367
37
2.9
37
97
0
198
23
38
16
21
1.92
18137--18212
16
4.8
16
77
1
73
9
15
35
39
1.80
18200--18247
6
8.3
6
84
9
64
0
20
50
29
1.49
18200--18247
11
4.2
12
81
10
64
0
20
50
29
1.49
18201--18247
17
2.8
17
86
0
76
0
21
51
27
1.48
18988--19031
16
2.7
16
89
3
61
4
15
52
27
1.63
19037--19082
16
2.9
16
86
0
74
10
13
36
39
1.79
19020--19082
32
2.0
32
83
0
81
9
14
36
39
1.78
19803--19827
12
2.1
12
100
0
50
60
40
0
0
0.97
20891--21133
121
2.0
121
100
0
486
27
21
9
40
1.85
25433--25490
30
1.9
30
92
0
98
18
10
22
48
1.78
29133--29190
18
3.2
18
90
7
91
50
12
5
32
1.62
29224--29250
13
2.1
13
100
0
54
48
14
7
29
1.71
29839--29886
24
2.0
25
88
12
73
58
0
0
41
0.98
30802--30892
33
2.8
33
93
3
148
15
40
28
15
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31087--31160
33
2.2
33
92
0
121
12
35
39
13
1.82
31176--31263
41
2.1
41
82
0
113
31
19
7
40
1.80

Tables:   1

The End!