Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011438.1 Corchorus capsularis cultivar CVL-1 contig11459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50423

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--36
2
18.0
2
100
0
72
50
0
0
50
1.00
1510--1636
64
2.0
64
98
0
245
34
11
28
25
1.90
3766--3820
15
3.5
15
73
9
56
18
7
34
40
1.78
3757--3835
32
2.5
32
93
0
131
17
8
34
39
1.81
3757--3849
32
2.9
32
88
0
96
19
8
32
39
1.82
4639--4671
16
2.0
17
88
5
50
45
0
0
54
0.99
4736--4841
16
6.6
16
69
12
65
9
9
29
51
1.65
4736--4820
32
2.7
32
78
8
84
11
10
27
50
1.71
4736--4842
48
2.2
48
80
4
117
10
9
28
51
1.67
4749--4823
32
2.3
32
84
4
89
12
9
25
53
1.67
5951--6030
32
2.5
32
85
0
97
11
35
31
22
1.89
6008--6100
33
2.8
33
85
3
125
6
32
34
26
1.82
9941--9976
19
1.9
18
88
5
54
33
22
2
41
1.68
12241--12282
6
7.0
6
88
0
57
66
2
2
28
1.16
18776--18811
19
1.9
18
88
5
54
33
22
2
41
1.68
22969--22999
7
4.6
7
92
8
55
87
0
0
12
0.55
28220--28244
13
1.9
13
100
0
50
32
16
12
40
1.84
31602--31635
2
17.0
2
100
0
68
50
0
0
50
1.00
33310--33354
13
3.5
13
90
3
74
22
13
8
55
1.65
33351--33385
6
5.5
6
87
12
52
31
0
14
54
1.40
33672--33713
22
1.9
22
95
0
75
42
16
4
35
1.69
34814--34847
6
5.5
6
93
6
59
32
0
14
52
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34814--34847
13
2.8
12
91
8
59
32
0
14
52
1.42
35355--35482
43
3.0
43
87
1
177
25
24
21
28
1.99
38663--38821
57
2.8
57
98
0
300
23
27
20
28
1.99
39665--39705
18
2.3
18
86
0
55
12
34
7
46
1.69

Tables:   1

The End!