Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001144.1 Corchorus capsularis cultivar CVL-1 contig01144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12998
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--38  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

                                                                      
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

         39 TAACACGTAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   34  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:9593 original size:7 final size:7

Alignment explanation


    Indices: 9581--9610  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       9571 ATATATATAT

                   
       9581 CATTCCC
          1 CATTCCC

                   
       9588 CATTCCC
          1 CATTCCC

                   
       9595 CATTCCC
          1 CATTCCC

              *    
       9602 CAATCCC
          1 CATTCCC

              
       9609 CA
          1 CA

       9611 GCTTATAAAA


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   22  1.00

ACGTcount: A:0.20, C:0.57, G:0.00, T:0.23


Consensus pattern (7 bp):   
CATTCCC

Done.