genome.fa.s11441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011441.1 Corchorus capsularis cultivar CVL-1 contig11462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44940

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1293--1354	33	1.9	32	90	3	97	20	20	20	37	1.95
1293--1369	33	2.3	33	84	4	93	22	23	19	35	1.96
1640--1683	22	2.0	22	86	0	61	15	22	36	25	1.94
2458--2491	16	2.2	16	89	5	52	61	8	0	29	1.26
3717--3752	19	1.9	18	88	5	54	33	22	2	41	1.68
7685--7724	21	1.9	21	94	0	71	22	7	15	55	1.65
7691--7736	21	2.2	21	88	7	67	26	6	10	56	1.58
14104--14174	26	2.7	26	93	2	115	12	18	28	40	1.87
14108--14204	27	3.6	26	86	6	88	16	19	22	41	1.90
14724--14772	23	2.2	22	82	10	55	65	4	4	26	1.29
20869--20905	15	2.3	17	90	9	60	83	0	16	0	0.64
20869--20906	16	2.3	17	86	4	51	84	0	15	0	0.63
21024--21108	26	3.2	26	63	18	66	42	11	34	11	1.78
21007--21160	54	2.9	54	92	1	238	40	13	32	13	1.84
24769--24811	19	2.3	19	83	0	59	39	2	6	51	1.42
26046--26250	38	5.3	38	80	3	207	49	6	16	27	1.69
26465--26517	25	2.0	26	85	10	72	56	0	13	30	1.37
26494--26586	16	5.4	18	65	22	56	52	1	20	25	1.53
26547--26586	19	2.2	18	86	13	55	55	0	22	22	1.44
26417--26802	95	4.0	95	84	8	510	55	1	20	22	1.51
26565--26636	28	2.7	27	91	6	112	59	1	19	19	1.45
26565--26802	26	9.6	25	69	22	139	54	1	21	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26565--26656	27	3.4	27	83	7	107	58	2	20	18	1.49
26426--26782	194	1.8	194	90	4	576	55	1	20	22	1.52
34336--34366	13	2.3	14	94	5	55	70	0	0	29	0.87
35426--35474	21	2.3	21	85	0	62	28	28	32	10	1.90
40025--40384	21	16.5	22	72	18	115	19	19	6	54	1.65
40037--40392	43	8.1	42	78	10	304	19	19	6	54	1.64
40022--40424	64	6.2	64	74	13	252	19	19	5	55	1.64
40103--40158	15	3.9	15	74	9	62	16	21	5	57	1.59
40136--40392	42	6.0	42	81	7	268	19	19	5	54	1.64
41526--41781	50	5.1	49	87	4	307	37	15	6	40	1.72
41526--41781	99	2.5	98	82	5	307	37	15	6	40	1.72
44002--44109	50	2.2	50	98	1	209	43	16	16	23	1.87
44499--44571	27	2.7	27	80	2	83	43	28	12	15	1.82

Tables:   1

The End!