Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011445.1 Corchorus capsularis cultivar CVL-1 contig11466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6628
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32


Found at i:1145 original size:75 final size:81

Alignment explanation


    Indices: 1021--1229  Score: 268
    Period size: 75  Copynumber: 2.6  Consensus size: 81

       1011 AAAATTAATA

                                              *        *        *       *    
       1021 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGAAGATATTTTAAGAAA-TAA-A
          1 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGAAGATTTAGGAGATATTTAAAGAAACAAATA

                *           
       1084 ATAATAA-T-AA-AGT
         66 ATAAAAATTGAATAGT

                                    *        *                               
       1097 -TGAGAATATTTTCTAAATCTTGCAAAATTGTGAAAGATTTAGGAGATATTTAAAGAAACAAATA
          1 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGAAGATTTAGGAGATATTTAAAGAAACAAATA

                            
       1161 ATAAAAATTGAATAGT
         66 ATAAAAATTGAATAGT

                                        **      *                
       1177 AATGAGAATATTTCTCTAAATCTTGCCAGGTTGTGGCAGATTTAGGAGATATT
          1 -ATGAGAATATTT-TCTAAATCTTGCCAAATTGTGGAAGATTTAGGAGATATT

       1230 AAATAATAAT


Statistics
Matches: 113,  Mismatches: 12, Indels: 9
        0.84            0.09        0.07

Matches are distributed among these distances:
  75   53  0.47
  76    2  0.02
  77    7  0.06
  78    1  0.01
  79    2  0.02
  80    3  0.03
  82   11  0.10
  83   34  0.30

ACGTcount: A:0.42, C:0.07, G:0.17, T:0.34


Consensus pattern (81 bp):   
ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGAAGATTTAGGAGATATTTAAAGAAACAAATA
ATAAAAATTGAATAGT
Done.