Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011448.1 Corchorus capsularis cultivar CVL-1 contig11469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58984

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
308--441
60
2.3
59
81
5
155
31
26
8
33
1.87
11927--11956
2
15.0
2
100
0
60
50
0
0
50
1.00
14955--15057
43
2.4
44
85
1
127
38
9
12
38
1.76
14954--15058
22
4.8
22
79
5
115
39
9
13
38
1.77
15509--15748
22
10.8
22
72
6
135
40
11
16
32
1.84
15831--15925
22
4.4
23
78
10
85
37
10
17
33
1.85
16237--16608
22
17.0
22
68
14
135
38
7
16
37
1.77
16437--16645
107
2.0
106
81
6
244
38
8
16
36
1.79
16704--16775
22
3.3
22
76
3
65
36
9
16
37
1.82
17637--17723
44
2.0
44
97
0
165
36
22
21
18
1.95
17682--17883
101
2.0
101
97
0
377
28
23
27
20
1.99
25793--25829
18
2.1
18
94
0
65
51
13
21
13
1.75
32386--32459
30
2.5
29
80
8
78
28
21
16
33
1.95
32407--32464
30
2.0
28
86
6
80
29
27
12
31
1.92
32409--32472
30
2.2
28
83
8
74
31
28
9
31
1.88
34267--34316
20
2.5
20
100
0
100
18
16
30
36
1.92
44897--44935
2
20.0
2
94
5
71
48
0
0
51
1.00
45535--45654
16
7.4
16
70
9
55
10
19
34
36
1.85
45585--45654
32
2.2
32
82
10
90
8
22
37
31
1.85
46743--46780
11
3.5
11
89
10
51
39
0
5
55
1.23
47048--47181
16
8.4
16
75
3
126
11
20
35
32
1.88
47048--47181
32
4.2
32
83
3
153
11
20
35
32
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47386--47450
30
2.1
31
94
2
114
27
20
4
47
1.69
47727--47865
22
6.3
22
68
14
70
33
9
18
38
1.83
48002--48236
22
10.5
22
67
21
89
42
8
14
34
1.77
48058--48157
21
4.5
21
71
24
64
44
7
14
35
1.72
48093--48141
25
1.9
26
87
4
73
46
4
14
34
1.63
48118--48222
22
4.8
23
77
5
94
40
9
11
38
1.74
48118--48266
44
3.4
44
79
12
157
42
8
11
37
1.72
48348--48414
19
3.5
19
85
6
91
43
11
19
25
1.85
48596--48658
23
2.7
23
85
0
81
41
4
11
42
1.61
48649--48700
26
2.0
26
84
0
68
36
11
13
38
1.81
48894--48945
22
2.4
22
83
0
59
40
11
11
36
1.78
50659--50693
16
2.2
16
100
0
70
31
34
0
34
1.58
58820--58867
22
2.3
20
86
10
62
39
25
16
18
1.91
58787--58889
53
1.9
53
86
0
143
35
27
20
16
1.94
58839--58937
31
3.2
31
82
0
117
33
26
21
19
1.97

Tables:   1

The End!