Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011449.1 Corchorus capsularis cultivar CVL-1 contig11470, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91961

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1386--1676
156
1.9
155
82
8
376
36
20
12
30
1.90
1386--1746
156
2.3
154
79
9
367
36
20
13
30
1.90
3248--3292
22
2.0
23
91
4
74
51
8
4
35
1.54
5559--5588
7
4.4
7
95
4
53
76
0
0
23
0.78
11932--11974
17
2.5
17
85
7
52
41
6
44
6
1.58
16216--16276
32
1.9
32
100
0
122
32
13
9
44
1.76
16564--16640
31
2.5
31
78
0
91
18
27
18
36
1.94
17942--17976
2
17.5
2
100
0
70
48
0
0
51
1.00
21249--21276
4
7.0
4
100
0
56
0
25
0
75
0.81
28938--28984
2
23.0
2
91
4
76
48
0
4
46
1.21
31956--32009
27
2.0
27
100
0
108
51
3
14
29
1.60
31953--32001
14
3.6
14
72
5
55
53
4
14
28
1.59
32313--32350
11
3.5
11
89
10
51
39
0
2
57
1.12
32515--32544
2
15.0
2
100
0
60
50
0
0
50
1.00
43001--43034
1
34.0
1
87
0
50
0
5
0
94
0.32
43000--43034
10
3.5
10
92
0
61
0
8
0
91
0.42
50689--50715
2
13.5
2
100
0
54
48
0
0
51
1.00
51667--51711
21
2.2
20
84
11
56
40
20
4
35
1.72
52583--52648
31
2.1
31
91
0
105
27
18
4
50
1.66
52929--53089
44
3.6
43
79
6
135
33
11
18
36
1.86
52928--53111
22
8.3
22
78
11
108
32
10
19
37
1.86
53150--53271
22
5.5
22
71
10
79
35
11
18
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53293--53564
22
12.5
22
70
15
111
41
9
13
34
1.78
53645--53708
19
3.3
19
91
2
101
43
12
21
21
1.86
53675--54151
44
10.9
45
69
11
192
37
9
15
36
1.81
53823--53864
22
1.9
22
85
0
57
45
11
16
26
1.82
53894--53998
23
4.6
23
76
5
97
36
7
14
41
1.74
53894--53998
46
2.3
45
81
12
117
36
7
14
41
1.74
56754--56936
54
3.3
54
84
9
217
32
22
8
36
1.85
56947--56998
26
2.0
26
100
0
104
50
11
0
38
1.39
56953--57008
26
2.2
26
86
0
76
50
12
1
35
1.51
57544--57613
32
2.2
32
97
0
131
41
7
2
48
1.45
62030--62088
31
1.9
31
85
0
82
30
23
23
22
1.99
63097--63270
67
2.6
67
91
0
278
25
9
24
40
1.86
63232--63311
41
2.0
40
85
7
108
27
11
22
38
1.88
63227--63405
99
1.9
96
84
8
247
25
10
24
39
1.87
63517--63571
26
2.1
26
83
6
67
32
21
7
38
1.81
64077--64119
17
2.5
17
92
0
77
25
13
20
39
1.90
70597--70880
96
2.9
99
90
1
466
44
5
10
38
1.63
70929--71003
32
2.3
32
84
8
100
29
16
4
50
1.62
71094--71170
38
2.1
35
88
7
109
14
18
10
57
1.65
71307--71344
19
2.0
20
85
15
53
28
5
2
63
1.30
71510--71649
22
6.3
22
75
6
93
32
9
19
38
1.83
71685--71743
22
2.7
22
79
10
66
37
10
16
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71749--71814
22
3.0
22
80
2
71
36
4
19
39
1.72
71875--72003
22
5.8
22
72
8
75
39
10
13
35
1.80
72012--72068
22
2.6
22
76
15
64
49
7
7
36
1.57
72150--72205
19
2.8
20
81
8
78
44
10
16
28
1.80
72188--72305
22
5.4
22
67
9
80
44
9
10
35
1.70
72188--72313
44
2.9
43
75
11
123
45
9
10
34
1.71
72277--72415
60
2.2
61
82
6
163
43
8
11
35
1.72
72360--72416
20
2.7
21
83
10
71
40
7
12
40
1.70
72638--72691
22
2.5
22
84
0
63
40
11
11
37
1.76
72815--72857
6
7.2
6
94
0
77
65
0
16
18
1.28
78711--78737
14
1.9
14
100
0
54
81
7
3
7
0.97
85001--85044
21
2.2
20
83
4
52
56
4
6
31
1.46
86717--86757
12
3.3
13
83
10
59
56
7
0
36
1.27
86926--86950
13
1.9
13
100
0
50
56
16
4
24
1.57
87856--87896
6
7.2
6
86
5
50
2
26
0
70
0.99
88396--88435
20
2.0
21
85
14
57
35
25
5
35
1.78
89974--90028
3
18.3
3
96
0
101
30
1
0
67
1.01
89984--90038
9
6.4
8
95
2
65
32
0
0
67
0.91
90317--90383
21
3.2
21
95
0
125
38
11
17
31
1.87

Tables:   1

The End!