Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011454.1 Corchorus capsularis cultivar CVL-1 contig11475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34102

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--50
19
2.5
19
89
3
69
43
10
18
27
1.82
41--602
22
25.7
22
69
14
182
38
10
14
36
1.81
133--203
23
3.1
23
83
2
72
47
8
15
28
1.74
2560--2601
2
21.5
2
92
4
68
45
0
0
54
0.99
3767--3798
2
16.0
2
93
0
55
46
3
0
50
1.17
4151--4263
51
2.3
49
84
10
158
59
6
2
31
1.36
6991--7072
27
3.2
27
66
22
68
46
9
13
30
1.75
6974--7116
49
2.9
49
92
0
241
49
10
9
30
1.69
7006--7084
27
3.1
27
65
29
73
50
11
7
30
1.66
7018--7095
22
3.3
22
67
27
61
50
7
8
33
1.63
10566--10607
22
2.0
21
86
13
59
26
26
4
42
1.75
12699--12739
10
4.3
10
78
12
50
12
0
12
75
1.05
12700--12740
17
2.3
18
91
4
66
12
0
14
73
1.11
13235--13265
16
2.0
15
93
6
53
45
32
9
12
1.75
13632--13780
16
9.4
16
83
5
169
6
20
38
33
1.79
14227--14274
21
2.3
21
88
0
78
56
6
8
29
1.53
14382--14491
16
6.9
16
73
6
89
10
20
36
32
1.87
14389--14473
31
2.7
31
83
1
107
12
22
32
31
1.92
14383--14492
32
3.5
32
81
5
116
10
20
36
31
1.88
14383--14515
32
4.2
32
80
7
85
11
21
36
30
1.89
14550--14593
17
2.6
18
85
10
65
13
15
43
27
1.85
16292--16359
29
2.4
29
90
2
102
47
0
38
14
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16480--16536
30
1.9
30
92
3
98
45
1
15
36
1.57
18031--18086
16
3.5
16
72
0
58
51
28
12
7
1.65
18226--18291
17
4.1
16
75
15
64
36
37
10
15
1.82
18959--19006
24
2.0
25
83
4
62
47
2
27
22
1.62
29193--29308
33
3.6
33
81
5
123
40
17
9
32
1.82
29344--29452
33
3.3
33
80
5
148
43
20
11
24
1.85
29319--29461
66
2.2
66
94
0
250
42
19
10
27
1.84

Tables:   1

The End!