genome.fa.s11468.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011468.1 Corchorus capsularis cultivar CVL-1 contig11489, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23142

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562--599	18	2.2	17	86	13	51	63	0	36	0	0.95
2019--2067	21	2.3	22	83	13	59	40	12	14	32	1.83
3995--4061	35	1.9	35	96	0	125	49	19	13	17	1.80
5082--5342	38	6.8	36	81	8	202	46	9	16	27	1.77
5082--5339	75	3.4	76	75	10	224	46	9	17	27	1.78
5116--5348	77	3.0	78	75	12	223	47	9	16	26	1.77
5370--5528	39	4.1	39	88	4	241	47	7	21	23	1.76
5990--6266	22	12.5	22	74	13	230	22	19	5	52	1.65
6063--6116	14	3.8	15	83	14	62	25	18	1	53	1.54
5977--6230	136	1.9	137	87	2	377	22	19	4	52	1.64
6235--6458	35	6.3	37	76	14	143	20	20	3	55	1.58
6250--6322	29	2.3	33	81	13	82	20	16	4	58	1.54
6371--6473	7	14.6	7	66	13	50	19	22	1	56	1.52
6321--6473	14	10.9	14	67	12	53	18	23	2	54	1.56
6371--6439	28	2.4	29	76	7	70	17	21	1	59	1.45
6399--6495	50	2.0	49	87	2	140	20	21	3	54	1.58
6461--6500	21	1.9	21	84	0	53	17	22	2	57	1.52
6540--6772	74	3.2	72	78	8	251	26	17	6	49	1.70
6604--6772	34	4.7	38	71	19	132	26	15	6	52	1.67
6658--6909	126	2.0	123	83	7	312	26	19	6	47	1.73
6730--6838	55	2.0	53	89	3	164	26	18	7	47	1.74
6782--6883	37	2.9	34	65	18	82	29	20	5	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6815--7137	38	8.7	37	68	15	123	27	19	6	46	1.74
6837--6964	34	3.7	34	70	13	107	28	18	5	46	1.71
6782--6967	71	2.6	71	93	0	318	29	19	5	45	1.73
7009--7139	38	3.5	38	83	5	124	27	19	6	46	1.75
12961--13070	36	3.1	36	89	1	168	44	7	21	26	1.78
12961--13107	72	2.0	71	82	10	174	44	7	21	27	1.78
13033--13308	40	7.0	38	74	15	150	44	7	22	25	1.80
13033--13210	87	2.0	86	86	8	243	45	7	21	25	1.77
13122--13329	35	5.7	35	89	7	283	45	8	22	24	1.79
13122--13329	74	2.8	70	86	12	276	45	8	22	24	1.79
13358--13472	35	3.3	35	91	3	171	41	4	21	32	1.73
18371--18422	2	25.5	2	88	3	77	48	0	3	48	1.20
19513--19545	16	2.1	16	94	0	57	3	12	33	51	1.54

Tables:   1

The End!