Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011469.1 Corchorus capsularis cultivar CVL-1 contig11490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63752

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14231--14302
34
2.1
36
92
5
121
25
16
8
50
1.73
14902--15442
276
2.0
276
95
1
987
39
13
7
39
1.73
16558--16599
20
2.1
20
100
0
84
26
45
0
28
1.54
19711--19748
20
1.9
20
94
0
67
18
2
18
60
1.48
20592--20637
24
2.0
23
91
4
74
52
0
28
19
1.47
21814--21839
13
2.0
13
100
0
52
23
0
38
38
1.55
23859--23910
27
1.9
27
84
0
68
32
34
1
30
1.69
25505--25592
33
2.7
33
87
0
122
7
25
44
22
1.80
29901--30000
49
2.0
49
100
0
200
29
19
16
36
1.93
39206--39267
31
2.0
31
96
0
115
35
17
6
40
1.76
46060--46194
67
2.0
66
97
1
252
39
14
22
23
1.91
48630--48695
31
2.1
31
88
0
96
50
4
16
28
1.65
50882--50906
2
12.5
2
100
0
50
48
0
0
52
1.00
51153--51178
7
3.7
7
100
0
52
0
11
0
88
0.52
52067--52117
24
2.1
24
85
0
66
50
19
11
17
1.76
56134--56443
167
1.9
166
82
2
388
26
14
21
37
1.92
61770--61851
8
10.5
8
78
5
87
47
1
20
30
1.58
61770--61852
16
5.3
16
81
5
98
46
1
20
31
1.58
61770--61851
24
3.5
24
85
3
105
47
1
20
30
1.58
61838--61930
42
2.2
42
80
7
107
46
4
21
27
1.70
61990--62038
21
2.3
21
92
3
80
44
6
20
28
1.75
61784--62038
22
11.6
22
75
14
101
45
5
20
28
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61982--62025
14
3.1
14
90
3
70
50
6
15
27
1.70
62156--62203
14
3.3
14
88
5
60
43
2
22
31
1.65
62134--62224
36
2.6
35
81
11
107
45
3
21
29
1.68
61961--62448
215
2.3
214
79
8
501
44
7
21
26
1.79
62296--62418
22
5.8
21
74
12
99
45
4
21
27
1.72
62328--62447
14
8.1
14
69
20
75
45
3
21
30
1.68
62335--62425
6
13.3
6
72
21
56
46
2
20
30
1.63
62296--62425
64
2.0
63
85
1
170
46
4
21
27
1.71
62356--62445
35
2.5
35
77
15
103
44
4
22
28
1.72
62480--62531
24
2.1
26
85
7
72
44
5
21
28
1.75
62490--62661
8
22.2
8
66
14
67
48
3
20
27
1.65
62596--62661
16
4.1
16
78
0
78
48
3
19
28
1.64
62596--62661
24
2.8
24
83
0
87
48
3
19
28
1.64
63675--63749
23
3.3
23
73
16
75
0
21
0
78
0.75
63677--63723
13
3.5
13
88
8
60
0
19
0
80
0.70
63691--63752
10
6.0
10
82
15
65
0
19
0
80
0.71
63676--63751
36
2.1
37
87
7
111
0
21
0
78
0.74

Tables:   1

The End!