Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011470.1 Corchorus capsularis cultivar CVL-1 contig11491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5065
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:357 original size:24 final size:25

Alignment explanation


    Indices: 313--360  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 25

        303 GTTTTTTTTT

                            *        
        313 TTTTGCCACGACCAGTGTGTGGTCG
          1 TTTTGCCACGACCAGTATGTGGTCG

                                     
        338 TTTTG-CACGACCA-TCATGTGGTC
          1 TTTTGCCACGACCAGT-ATGTGGTC

        361 TTGAATTTCC


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  23    1  0.05
  24   15  0.71
  25    5  0.24

ACGTcount: A:0.15, C:0.25, G:0.27, T:0.33


Consensus pattern (25 bp):   
TTTTGCCACGACCAGTATGTGGTCG
Done.