Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011474.1 Corchorus capsularis cultivar CVL-1 contig11495, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2114
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34


Found at i:504 original size:19 final size:20

Alignment explanation


    Indices: 466--504  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        456 GCTTGGTCCC

                  *      *      
        466 TTTGCTTCCAAATTTCAATT
          1 TTTGCTACCAAATCTCAATT

                                
        486 TTTGCTACCAAA-CTCAATT
          1 TTTGCTACCAAATCTCAATT

        505 CCAACTTCAA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  19    6  0.35
  20   11  0.65

ACGTcount: A:0.28, C:0.23, G:0.05, T:0.44


Consensus pattern (20 bp):   
TTTGCTACCAAATCTCAATT
Done.