Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011478.1 Corchorus capsularis cultivar CVL-1 contig11499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64797

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
825--908
41
2.0
42
93
2
143
26
17
10
45
1.81
5483--5607
63
2.0
64
91
1
207
33
18
13
34
1.90
5625--5649
7
3.6
7
100
0
50
32
12
0
56
1.36
10280--10323
21
2.1
21
91
0
70
18
36
9
36
1.82
20526--20550
13
1.9
13
100
0
50
24
24
20
32
1.98
35393--35646
51
5.0
51
85
1
287
32
12
35
20
1.90
36471--36529
30
2.0
30
89
0
91
37
20
15
27
1.92
43594--43892
113
2.5
124
84
6
404
43
15
10
31
1.80
43845--43973
64
2.0
64
84
3
170
39
20
14
25
1.91
47022--47047
2
13.0
2
100
0
52
0
50
0
50
1.00
49459--49507
3
16.3
3
100
0
98
32
0
0
67
0.91
49730--49779
3
16.7
3
100
0
100
32
0
0
68
0.90
49819--50369
188
2.9
188
92
2
930
33
16
22
27
1.95
50560--50723
82
2.0
82
84
7
217
35
9
12
42
1.76
58212--58338
16
8.0
15
77
17
116
33
37
19
9
1.84
58211--58340
32
4.1
32
89
2
190
33
36
20
9
1.85
58211--58340
48
2.7
48
78
16
144
33
36
20
9
1.85
58323--58368
22
2.0
23
87
4
67
41
26
17
15
1.88
60640--60719
16
5.0
16
76
0
88
33
35
20
11
1.88
63155--63192
3
13.0
3
94
5
69
65
0
0
34
0.93
63153--63192
20
2.0
20
100
0
80
65
0
0
35
0.93
63158--63192
17
2.1
17
100
0
70
65
0
0
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63532--63575
13
3.1
14
80
9
54
50
0
6
43
1.29
64274--64411
32
4.2
32
83
6
152
15
35
36
12
1.86
64274--64412
65
2.1
65
86
0
188
15
35
35
12
1.86

Tables:   1

The End!