Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011484.1 Corchorus capsularis cultivar CVL-1 contig11505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50778

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2610--2663
27
2.0
28
89
10
85
46
9
11
33
1.71
28504--28600
51
1.9
50
87
2
140
36
13
23
26
1.92
36330--36601
22
12.5
22
72
15
140
35
13
8
41
1.76
36371--36455
23
3.7
23
84
1
100
37
14
7
41
1.73
36364--36455
46
2.0
45
85
2
121
38
16
6
39
1.74
36708--36759
22
2.4
22
90
3
88
36
11
7
44
1.70
36785--36885
22
4.5
22
79
8
89
33
14
10
40
1.81
36695--36835
76
1.9
76
80
5
169
33
14
9
42
1.78
36804--36896
22
4.1
23
77
13
86
34
15
10
39
1.82
36964--37029
26
2.5
26
97
0
123
45
13
4
36
1.64
37016--37116
44
2.3
44
81
6
116
35
20
8
34
1.84
37016--37116
22
4.6
22
75
14
91
35
20
8
34
1.84
37252--37328
22
3.6
21
76
10
75
36
19
9
35
1.84
37393--37448
19
3.0
19
74
10
62
62
0
8
28
1.25
37588--37612
2
12.5
2
100
0
50
48
0
0
52
1.00
40177--40214
16
2.4
16
82
4
51
7
13
36
42
1.73
40632--40794
82
2.0
82
87
4
240
25
12
23
38
1.91
40748--41077
163
2.0
162
87
2
466
26
18
17
37
1.93

Tables:   1

The End!