Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011485.1 Corchorus capsularis cultivar CVL-1 contig11506, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36128

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12792--13072
139
2.0
139
100
0
562
35
16
15
33
1.90
13834--13915
33
2.5
33
97
0
155
12
35
40
12
1.80
13834--13987
33
4.7
33
88
4
145
11
32
40
15
1.84
18178--18205
2
14.0
2
100
0
56
50
0
0
50
1.00
19130--19157
2
14.0
2
100
0
56
50
0
0
50
1.00
22708--22756
3
16.3
3
91
0
80
65
2
2
30
1.15
23656--23702
22
2.1
22
96
0
85
42
4
6
46
1.48
23656--23698
11
3.9
11
90
0
68
41
4
6
46
1.51
29534--29792
49
5.3
46
77
10
171
30
15
32
22
1.95
29567--29792
48
4.7
48
78
6
188
28
16
32
23
1.96
32561--32609
23
2.1
23
92
0
80
48
10
6
34
1.62
34912--34964
5
10.6
5
89
0
79
52
20
1
24
1.56

Tables:   1

The End!