Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011486.1 Corchorus capsularis cultivar CVL-1 contig11507, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20916
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:3078 original size:11 final size:10
Alignment explanation
Indices: 3060--3093 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
3050 GAAGTTCGTG
3060 TTTTGAAGAT
1 TTTTGAAGAT
3070 TTCTTGAAGAT
1 TT-TTGAAGAT
3081 ATTTTGAAGAT
1 -TTTTGAAGAT
3092 TT
1 TT
3094 GAAGACAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 4 0.18
11 16 0.73
12 2 0.09
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.50
Consensus pattern (10 bp):
TTTTGAAGAT
Found at i:11053 original size:22 final size:22
Alignment explanation
Indices: 10910--11465 Score: 86
Period size: 22 Copynumber: 25.6 Consensus size: 22
10900 GAAATATTCA
*
10910 TATGAAATTATGATAACCTT-T
1 TATGAAATTTTGATAACCTTCT
* *
10931 CTATTAAATTATGAT--CC--CAT
1 -TATGAAATTTTGATAACCTTC-T
* *
10951 TATGAAATTTTGGTAACCTTCC
1 TATGAAATTTTGATAACCTTCT
* ** *
10973 TATGAAATTTTAATAATGATAC-
1 TATGAAATTTTGATAA-CCTTCT
* * * *
10995 TATGGAATTTCGAGAACCTTTT
1 TATGAAATTTTGATAACCTTCT
* **
11017 TAT-AATTTTTTTTAACCTTCT
1 TATGAAATTTTGATAACCTTCT
* * *
11038 TATGAAATTTTGTTAACCTCCC
1 TATGAAATTTTGATAACCTTCT
* * * **
11060 TAAGGAATTTT-AAAGACCTTAA
1 TATGAAATTTTGATA-ACCTTCT
*
11082 TATGAAATTTTGATAA-CTTCCC
1 TATGAAATTTTGATAACCTT-CT
* ** *
11104 AATGAAATTTTGATAACCAACAC
1 TATGAAATTTTGATAACCTTC-T
* * *
11127 TATGAGATGTTGATAA-CTTCCA
1 TATGAAATTTTGATAACCTT-CT
* * * *
11149 TATGATATATTGACAACC-ACGT
1 TATGAAATTTTGATAACCTTC-T
* * * *
11171 TATGTAAA-TTTAAAAACCTCCA
1 TATG-AAATTTTGATAACCTTCT
* *
11193 TATG-AATTGTT-AGTAATC-ACAT
1 TATGAAATT-TTGA-TAACCTTC-T
* *
11215 TCTGAAATTTTGATAATCAC-AC-
1 TATGAAATTTTGATAA-C-CTTCT
* * *
11237 TATGAAATTGTGATAATC-TCGC
1 TATGAAATTTTGATAACCTTC-T
* * *
11259 TATGAAATTTTAATAAATCTTCC
1 TATGAAATTTTGAT-AACCTTCT
* * *
11282 TAT-ACAATTTTGATCAACATCCC
1 TATGA-AATTTTGAT-AACCTTCT
* *
11305 TATAAAATTTTGATAACTTTCT
1 TATGAAATTTTGATAACCTTCT
*
11327 TATGAAATCTTGATAA----C-
1 TATGAAATTTTGATAACCTTCT
* * * *
11344 TA-CAAATTTTGATAATCTCCC
1 TATGAAATTTTGATAACCTTCT
**
11365 TATGATTTTTTGATAACC-TCAT
1 TATGAAATTTTGATAACCTTC-T
* * * * * *
11387 TATGAAATCTCGTTAATCTCCC
1 TATGAAATTTTGATAACCTTCT
* * *
11409 TATGAAATTTTGATCTACATAC-
1 TATGAAATTTTGAT-AACCTTCT
*
11431 TATGAAATTTTGATAACCCTCT
1 TATGAAATTTTGATAACCTTCT
*
11453 TATGAAAATTTGA
1 TATGAAATTTTGA
11466 AAACTAAACT
Statistics
Matches: 380, Mismatches: 111, Indels: 86
0.66 0.19 0.15
Matches are distributed among these distances:
16 11 0.03
17 2 0.01
18 1 0.00
19 11 0.03
20 8 0.02
21 31 0.08
22 243 0.64
23 67 0.18
24 6 0.02
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCT
Found at i:11167 original size:45 final size:45
Alignment explanation
Indices: 11082--11167 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
11072 AAGACCTTAA
* * *
11082 TATGAAATTTTGATAACTTCCCAATGAAATTTTGATAACCAACAC
1 TATGAAATGTTGATAACTTCCCAATGAAATATTGACAACCAACAC
* *
11127 TATGAGATGTTGATAACTT-CCATATGATATATTGACAACCA
1 TATGAAATGTTGATAACTTCCCA-ATGAAATATTGACAACCA
11168 CGTTATGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.09
45 32 0.91
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (45 bp):
TATGAAATGTTGATAACTTCCCAATGAAATATTGACAACCAACAC
Found at i:11284 original size:23 final size:22
Alignment explanation
Indices: 11217--11487 Score: 106
Period size: 22 Copynumber: 12.5 Consensus size: 22
11207 AATCACATTC
*
11217 TGAAATTTTGAT-AATCACACTA
1 TGAAATTTTGATAAATCTC-CTA
*
11239 TGAAATTGTGAT-AATCTCGCTA
1 TGAAATTTTGATAAATCTC-CTA
*
11261 TGAAATTTTAATAAATCTTCCTA
1 TGAAATTTTGATAAATC-TCCTA
11284 T-ACAATTTTGATCAACATC-CCTA
1 TGA-AATTTTGAT-AA-ATCTCCTA
* * * *
11307 TAAAATTTTGATAACTTTCTTA
1 TGAAATTTTGATAAATCTCCTA
*
11329 TGAAATCTTGAT-AA----CTA
1 TGAAATTTTGATAAATCTCCTA
*
11346 -CAAATTTTGAT-AATCTCCCTA
1 TGAAATTTTGATAAATCT-CCTA
** * *
11367 TGATTTTTTGAT-AACCTCATTA
1 TGAAATTTTGATAAATCTC-CTA
* * *
11389 TGAAATCTCG-TTAATCTCCCTA
1 TGAAATTTTGATAAATCT-CCTA
** *
11411 TGAAATTTTGATCTA-CATACTA
1 TGAAATTTTGATAAATC-TCCTA
** *
11433 TGAAATTTTGATAACCCTCTTA
1 TGAAATTTTGATAAATCTCCTA
* *
11455 TGAAAATTTGA-AAA-CTAAACTA
1 TGAAATTTTGATAAATCT--CCTA
11477 TGAAATTTTGA
1 TGAAATTTTGA
11488 AATCCTCCCT
Statistics
Matches: 187, Mismatches: 41, Indels: 42
0.69 0.15 0.16
Matches are distributed among these distances:
16 11 0.06
17 2 0.01
20 2 0.01
21 9 0.05
22 120 0.64
23 35 0.19
24 5 0.03
25 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.39
Consensus pattern (22 bp):
TGAAATTTTGATAAATCTCCTA
Found at i:11369 original size:128 final size:126
Alignment explanation
Indices: 11219--11459 Score: 286
Period size: 128 Copynumber: 1.9 Consensus size: 126
11209 TCACATTCTG
* * * *
11219 AAATTTTGATAATCACACTATGAAATTGTGATAATCTCGCTATGAAATTTTAATAAATCTTCCTA
1 AAATTTTGATAATCACACTATGAAATTGTGATAACCTCACTATGAAA-TCTAATAAATCTCCCTA
* **
11284 T-ACAATTTTGATCAACATCCCTATAAAATTTTGATAACTTTCTTATGAAATCTTGATAACTAC
65 TGA-AATTTTGATCAACAT-ACTATAAAATTTTGATAACCCTCTTATGAAATCTTGATAACTAC
* * ** * * ** *
11347 AAATTTTGATAATCTCCCTATGATTTTTTGATAACCTCATTATGAAATCTCGTTAATCTCCCTAT
1 AAATTTTGATAATCACACTATGAAATTGTGATAACCTCACTATGAAATCTAATAAATCTCCCTAT
* *
11412 GAAATTTTGATCTACATACTATGAAATTTTGATAACCCTCTTATGAAA
66 GAAATTTTGATCAACATACTATAAAATTTTGATAACCCTCTTATGAAA
11460 ATTTGAAAAC
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
126 27 0.29
127 27 0.29
128 40 0.43
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (126 bp):
AAATTTTGATAATCACACTATGAAATTGTGATAACCTCACTATGAAATCTAATAAATCTCCCTAT
GAAATTTTGATCAACATACTATAAAATTTTGATAACCCTCTTATGAAATCTTGATAACTAC
Found at i:11659 original size:21 final size:22
Alignment explanation
Indices: 11609--11714 Score: 90
Period size: 22 Copynumber: 4.8 Consensus size: 22
11599 AATCACATTT
11609 TGAAAATTTGATAACCTCTTTA
1 TGAAAATTTGATAACCTCTTTA
*
11631 TGAAAATTTGATAGCCTCTTTA
1 TGAAAATTTGATAACCTCTTTA
* * * *
11653 T-AAAATTTTGTTGACCCCTCTA
1 TGAAAA-TTTGATAACCTCTTTA
* * *
11675 TG-AAATTCTGATAATCACATTA
1 TGAAAATT-TGATAACCTCTTTA
* *
11697 TGTAATTTTGATAACCTC
1 TGAAAATTTGATAACCTC
11715 GCTTTAAAAT
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
21 6 0.09
22 55 0.85
23 4 0.06
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (22 bp):
TGAAAATTTGATAACCTCTTTA
Found at i:11698 original size:66 final size:66
Alignment explanation
Indices: 11628--11756 Score: 152
Period size: 66 Copynumber: 2.0 Consensus size: 66
11618 GATAACCTCT
* * * * ** *
11628 TTATGAAAATTTGATAGCCTC-TTTATAAAATTTTGTTGACCCCTCTATGAAATTCTGATAATCA
1 TTATGAAAATTTGATAACCTCGCTT-TAAAATTTTGATAACAACACTATGAAATTCTGATAATCA
11692 CA
65 CA
* * *
11694 TTATGTAATTTTGATAACCTCGCTTTAAAATTTTGATAACAACACTATGAAATTTTGATAATC
1 TTATGAAAATTTGATAACCTCGCTTTAAAATTTTGATAACAACACTATGAAATTCTGATAATC
11757 TTACTATAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
66 50 0.96
67 2 0.04
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (66 bp):
TTATGAAAATTTGATAACCTCGCTTTAAAATTTTGATAACAACACTATGAAATTCTGATAATCAC
A
Found at i:11746 original size:22 final size:22
Alignment explanation
Indices: 11672--11821 Score: 117
Period size: 22 Copynumber: 6.8 Consensus size: 22
11662 GTTGACCCCT
*
11672 CTATGAAATTCTGATAATCACA
1 CTATGAAATTTTGATAATCACA
* * * * *
11694 TTATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAATCACA
* *
11716 CTTTAAAATTTTGATAA-CAACA
1 CTATGAAATTTTGATAATC-ACA
**
11738 CTATGAAATTTTGATAATCTTA
1 CTATGAAATTTTGATAATCACA
* *
11760 CTAT-AAATTTTGATAATTTGATCT
1 CTATGAAATTTTGATAA--TCA-CA
*
11784 CTATGAAATTTTGATAATCACT
1 CTATGAAATTTTGATAATCACA
*
11806 CTATGAGA-TTTGATAA
1 CTATGAAATTTTGATAA
11822 CCTTCTATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
21 21 0.21
22 59 0.59
23 4 0.04
24 4 0.04
25 12 0.12
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (22 bp):
CTATGAAATTTTGATAATCACA
Found at i:11948 original size:22 final size:22
Alignment explanation
Indices: 11879--11978 Score: 73
Period size: 22 Copynumber: 4.5 Consensus size: 22
11869 CCTTCATATA
** *
11879 AAATTTTGATAACCTCCCCATG
1 AAATTTTGATAACCTGACTATG
* *
11901 AAATATT-AGTAACCTG-CTAATA
1 AAATTTTGA-TAACCTGACT-ATG
*
11923 AAATTTTGTTAACCAT-ACTATG
1 AAATTTTGATAACC-TGACTATG
11945 AAATTCTT-ATAACCTGACTATG
1 AAATT-TTGATAACCTGACTATG
*
11967 ACATTTTGATAA
1 AAATTTTGATAA
11979 TCTATTTGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
21 5 0.08
22 51 0.84
23 5 0.08
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (22 bp):
AAATTTTGATAACCTGACTATG
Found at i:11958 original size:44 final size:43
Alignment explanation
Indices: 11863--11978 Score: 103
Period size: 44 Copynumber: 2.7 Consensus size: 43
11853 ATTGAGACTT
* *
11863 TTATAACCTTCATATAAAATTTTGATAACCTCCCCATGAAATA
1 TTATAACCTGCATATAAAATTTTGATAACCTCACCATGAAATA
* * *
11906 TTAGTAACCTGC-TAATAAAATTTTGTTAACCAT-ACTATGAAATTC
1 TTA-TAACCTGCAT-ATAAAATTTTGATAACC-TCACCATGAAA-TA
* *
11951 TTATAACCTG-ACTATGACATTTTGATAA
1 TTATAACCTGCA-TATAAAATTTTGATAA
11979 TCTATTTGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
43 4 0.07
44 49 0.83
45 6 0.10
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (43 bp):
TTATAACCTGCATATAAAATTTTGATAACCTCACCATGAAATA
Found at i:12046 original size:22 final size:22
Alignment explanation
Indices: 12014--12078 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
12004 TTGTGATAAT
*
12014 TAACCACCCTATGAAATTTCAA
1 TAACCAACCTATGAAATTTCAA
* *
12036 TAACCAACCTAAGAAATTTTAA
1 TAACCAACCTATGAAATTTCAA
*
12058 TAACCTGATCCTATGAAATTT
1 TAACC--AACCTATGAAATTT
12079 TGATAACTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
22 24 0.67
24 12 0.33
ACGTcount: A:0.42, C:0.22, G:0.06, T:0.31
Consensus pattern (22 bp):
TAACCAACCTATGAAATTTCAA
Found at i:12075 original size:24 final size:23
Alignment explanation
Indices: 12021--12174 Score: 99
Period size: 22 Copynumber: 6.9 Consensus size: 23
12011 AATTAACCAC
* *
12021 CCTATGAAATTTCAATAACC-AA
1 CCTATGAAATTTTAATAACCTAT
*
12043 CCTAAGAAATTTTAATAACCTGAT
1 CCTATGAAATTTTAATAACCT-AT
*
12067 CCTATGAAATTTTGATAA-CT-T
1 CCTATGAAATTTTAATAACCTAT
**
12088 CCATATGAAATTTTGGTAACC-A-
1 CC-TATGAAATTTTAATAACCTAT
* * *
12110 CACAATGGAATTTTGATAACC--T
1 C-CTATGAAATTTTAATAACCTAT
* *
12132 CCTCATGAAATTATAATAAAC-AT
1 CCT-ATGAAATTTTAATAACCTAT
* *
12155 CTTATGAAATTTTGATAACC
1 CCTATGAAATTTTAATAACC
12175 ACATAGAGAC
Statistics
Matches: 105, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
21 4 0.04
22 77 0.73
23 7 0.07
24 17 0.16
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.34
Consensus pattern (23 bp):
CCTATGAAATTTTAATAACCTAT
Found at i:12954 original size:30 final size:31
Alignment explanation
Indices: 12919--12977 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
12909 TGACAATTTA
12919 GAAATATGTTTTAAAAA-AAAGGTACAATTG
1 GAAATATGTTTTAAAAATAAAGGTACAATTG
*
12949 GAAATATGTTTTAAAAATAAGGGTACAAT
1 GAAATATGTTTTAAAAATAAAGGTACAAT
12978 CAGAAAACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 17 0.63
31 10 0.37
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.31
Consensus pattern (31 bp):
GAAATATGTTTTAAAAATAAAGGTACAATTG
Found at i:18037 original size:167 final size:166
Alignment explanation
Indices: 17648--18090 Score: 625
Period size: 167 Copynumber: 2.7 Consensus size: 166
17638 TGAGTCATTT
* * * *
17648 TCAATTGAGAAATGACCAAAAAGTTTATTTATTTGATTCTCTCAAGAATCAAAAGTTAGGACATT
1 TCAATTGAGAAATGACCAAAAAGTTTACTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATT
* * * ** * *
17713 TAAGTAATCTGCCAAGTAGGTAAAGACGAAAAAGATTAGTTCTCTATCTCATCATCAATCCTTGA
66 TAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAACTCAAAAGCAAGCCTTGA
* * * *
17778 TGGGGATCTTTTATTAATTTCACTACTCTATTCAAG
131 TAGGGATCTTTTAGTAATTCCACTACTCTATTAAAG
* * * *
17814 TCCATTGAGAAATAACCAAAAAGATTACTTATTTAATCCCCTCAAGAATAAAAAGTTAGGACATT
1 TCAATTGAGAAATGACCAAAAAGTTTACTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATT
* * *
17879 TAAATAATCTGTCAAGTAGGAAAAGACGAAAAAAATAAGTTCTCTAACTCCAAAAGCAAGCCTTG
66 TAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAACT-CAAAAGCAAGCCTTG
*
17944 GTAGGGATCTTTTAGTAATTCCACTACTCTATTAAAG
130 ATAGGGATCTTTTAGTAATTCCACTACTCTATTAAAG
* * * *
17981 TCAATTGAGAAATGACCAAAAAGTTTAGTTATTTAATCCCCTCGAGAATCAAAAGTTAAGATATT
1 TCAATTGAGAAATGACCAAAAAGTTTACTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATT
*
18046 TAAGTAATCTGCCAAGTGGGAAAAGACGAAAAAAATTAGTTCTCT
66 TAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCT
18091 CGCTCCTCAT
Statistics
Matches: 241, Mismatches: 35, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
166 100 0.41
167 141 0.59
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (166 bp):
TCAATTGAGAAATGACCAAAAAGTTTACTTATTTAATCCCCTCAAGAATCAAAAGTTAGGACATT
TAAGTAATCTGCCAAGTAGGAAAAGACGAAAAAAATTAGTTCTCTAACTCAAAAGCAAGCCTTGA
TAGGGATCTTTTAGTAATTCCACTACTCTATTAAAG
Found at i:18252 original size:38 final size:37
Alignment explanation
Indices: 18188--18263 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 37
18178 GTATAATTTG
18188 AAACTAATTCATTTTTATATAATATATATATATATAT
1 AAACTAATTCATTTTTATATAATATATATATATATAT
* *
18225 AAACTAATTC-TTCATTTATATATTATATATATCTATAT
1 AAACTAATTCATT--TTTATATAATATATATATATATAT
18263 A
1 A
18264 TATTCAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
36 2 0.06
37 10 0.29
38 23 0.66
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (37 bp):
AAACTAATTCATTTTTATATAATATATATATATATAT
Found at i:18344 original size:7 final size:7
Alignment explanation
Indices: 18329--18366 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
18319 AGTAAATGAA
*
18329 TTTAGAG
1 TTTAAAG
18336 TTTAAAG
1 TTTAAAG
18343 TTTAAAG
1 TTTAAAG
*
18350 TTTAAAC
1 TTTAAAG
18357 TTT-AAG
1 TTTAAAG
18363 TTTA
1 TTTA
18367 GACTATGGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (7 bp):
TTTAAAG
Found at i:18710 original size:45 final size:45
Alignment explanation
Indices: 18659--18748 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
18649 GATTACTTCT
18659 CCAGCTCATCATTAATACAGGGTAGAGATCTTTTAGTAATTCCAC
1 CCAGCTCATCATTAATACAGGGTAGAGATCTTTTAGTAATTCCAC
*** *
18704 CCAGCTCATCATTAATTTGGGGTAGGGATCTTTTAGTAATTCCAC
1 CCAGCTCATCATTAATACAGGGTAGAGATCTTTTAGTAATTCCAC
18749 TACACTCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (45 bp):
CCAGCTCATCATTAATACAGGGTAGAGATCTTTTAGTAATTCCAC
Found at i:18959 original size:3 final size:3
Alignment explanation
Indices: 18947--18978 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
18937 TAGTATATAT
18947 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
18979 TAGTACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Done.