Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011487.1 Corchorus capsularis cultivar CVL-1 contig11508, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77576

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1668--1700
2
16.5
2
100
0
66
51
0
0
48
1.00
3207--3236
12
2.6
11
90
10
51
76
0
23
0
0.78
6107--6238
70
1.9
68
90
3
210
41
14
16
27
1.87
11044--11075
8
4.0
8
91
0
55
34
3
0
62
1.11
18235--18333
41
2.4
41
85
9
123
16
14
21
48
1.80
20776--20925
75
2.0
75
100
0
300
32
16
16
36
1.90
25717--25744
1
28.0
1
100
0
56
100
0
0
0
0.00
29703--29862
60
2.7
59
83
3
194
37
16
16
28
1.91
29888--29967
31
2.6
31
83
0
106
26
18
15
40
1.90
30742--30768
13
2.1
13
100
0
54
40
0
22
37
1.54
44170--44244
37
2.0
37
94
0
132
26
22
20
30
1.98
45319--45348
2
15.0
2
92
0
51
0
0
46
53
1.00
49844--50098
125
2.0
127
90
3
406
34
11
22
31
1.89
61127--61152
2
13.0
2
100
0
52
50
0
0
50
1.00
61879--61923
21
2.1
21
87
0
63
35
11
22
31
1.89
63285--63322
11
3.5
11
89
10
51
39
0
2
57
1.12
73595--73655
15
4.4
15
73
21
53
31
1
11
55
1.45
73599--73654
26
2.2
26
83
6
69
32
1
10
55
1.45
73664--73723
25
2.5
25
86
5
79
45
0
18
36
1.50

Tables:   1

The End!