genome.fa.s11489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011489.1 Corchorus capsularis cultivar CVL-1 contig11510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50488

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282--1329	16	3.0	16	96	0	87	31	2	37	29	1.69
8214--8373	31	5.5	31	79	13	167	33	27	22	16	1.95
8256--8302	22	2.3	20	85	10	60	42	25	14	17	1.87
8223--8325	53	1.9	53	92	0	170	36	27	20	15	1.93
8770--8853	32	2.6	32	98	1	159	32	10	11	45	1.75
9623--9751	67	1.9	67	93	0	222	29	17	21	31	1.97
16945--16999	27	2.0	27	96	0	101	10	23	7	58	1.57
20940--21058	48	2.5	48	83	0	148	30	21	8	40	1.82
21055--21130	36	2.1	37	82	7	93	30	22	6	40	1.79
22907--22970	23	2.7	24	92	4	112	56	25	12	6	1.59
24616--24697	40	2.0	41	85	2	112	26	9	20	42	1.83
24677--24830	81	1.9	81	93	1	265	27	13	18	40	1.89
24762--24951	99	1.9	99	93	3	330	26	13	20	39	1.90
24925--25001	30	2.6	30	81	4	93	28	10	18	42	1.83
29141--29213	35	2.1	35	100	0	146	23	13	21	41	1.89
30706--30734	4	7.2	4	100	0	58	75	0	0	24	0.80
34832--34904	33	2.2	33	90	2	112	19	28	4	47	1.67
34972--35032	29	2.1	29	90	0	95	31	19	16	32	1.94
36257--36354	35	2.8	35	85	0	133	33	16	23	26	1.95
44419--44452	17	2.0	17	100	0	68	41	0	17	41	1.50
44414--44512	49	2.0	49	100	0	198	40	6	17	36	1.74
44468--44501	17	2.0	17	100	0	68	41	0	17	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46121--46171	26	2.2	23	83	16	61	33	23	7	35	1.84

Tables:   1

The End!