Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011490.1 Corchorus capsularis cultivar CVL-1 contig11511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37099

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
418--555
69
2.0
69
97
0
258
33
13
19
34
1.90
1349--1410
3
20.7
3
100
0
124
32
67
0
0
0.91
5554--8463
177
16.4
177
85
3
3714
34
11
16
37
1.85
5554--8463
530
5.5
530
85
2
3774
34
11
16
37
1.85
9827--12042
177
12.5
175
84
4
2603
33
11
17
38
1.85
9827--12042
531
4.2
533
85
3
2909
33
11
17
38
1.85
11970--12124
82
1.9
82
93
0
265
36
9
14
40
1.77
12040--13116
176
6.1
177
84
5
1337
32
11
17
38
1.85
11613--12476
435
2.0
436
88
3
1292
33
11
16
38
1.84
12040--13116
351
3.1
350
86
5
1437
32
11
17
38
1.85
11260--12826
791
2.0
787
85
6
1931
33
10
16
38
1.84
12040--13116
527
2.0
524
85
4
1434
32
11
17
38
1.85
13118--13770
176
3.7
176
79
6
651
33
11
16
37
1.85
14503--14664
16
10.5
16
72
10
131
55
27
9
6
1.58
14503--14677
32
5.6
31
78
11
162
54
28
10
6
1.59
14549--14669
58
2.1
58
93
0
206
53
30
9
5
1.57
14561--14648
42
2.1
42
82
0
104
55
30
9
4
1.51
14830--14932
32
3.2
32
86
1
145
38
33
11
16
1.85
14830--14932
15
6.5
15
68
14
57
38
33
11
16
1.85
18018--18062
3
15.0
3
88
0
54
24
66
6
2
1.27
26871--26929
28
2.1
28
93
6
102
44
11
6
37
1.68
27904--27964
18
3.4
18
73
8
52
18
55
14
11
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31905--31953
25
2.0
25
88
8
73
38
0
0
61
0.96
31874--31955
22
3.6
24
70
23
68
37
2
0
59
1.11
33229--33278
17
2.9
17
87
0
82
28
14
36
22
1.92
33596--34294
156
4.5
158
83
7
813
34
20
15
30
1.93
34787--34825
20
1.9
21
89
5
62
53
2
5
38
1.37
35919--35954
6
6.0
6
96
0
54
22
66
0
11
1.22

Tables:   1

The End!