Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011494.1 Corchorus capsularis cultivar CVL-1 contig11515, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62159

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
142--180
2
20.0
2
89
5
62
46
0
2
51
1.14
304--4692
830
5.3
831
89
3
6563
30
16
17
34
1.93
6450--7180
371
2.0
370
83
4
945
30
20
16
32
1.94
10563--10595
17
1.9
17
100
0
66
48
33
6
12
1.65
12691--12728
1
38.0
1
100
0
76
100
0
0
0
0.00
12998--13097
41
2.4
41
100
0
200
32
14
23
31
1.93
15035--15139
52
2.0
52
94
3
185
24
22
32
20
1.98
16445--16524
2
39.5
2
72
7
54
43
5
7
43
1.54
23218--23248
15
2.1
15
93
0
53
19
29
3
48
1.64
25109--25160
16
3.3
16
82
10
63
51
0
3
44
1.19
25146--25172
3
9.0
3
100
0
54
66
0
0
33
0.92
25591--25617
12
2.2
12
100
0
54
48
0
0
51
1.00
29148--29190
20
2.2
20
100
0
86
25
18
16
39
1.91
31215--31356
31
4.6
31
79
10
166
38
14
18
29
1.90
31155--31320
60
2.8
60
88
3
219
36
16
18
28
1.93
31379--31480
31
3.4
30
71
15
102
21
21
22
34
1.97
31379--31539
60
2.7
59
88
1
214
26
20
18
34
1.95
36336--36545
87
2.4
86
78
6
226
35
25
8
30
1.86
43173--43203
12
2.6
12
89
0
53
22
41
0
35
1.54
45418--45452
16
2.2
16
94
0
61
42
17
25
14
1.86
45497--45720
91
2.5
91
91
2
362
34
12
20
31
1.91
47812--47950
66
2.1
65
93
1
233
50
15
19
15
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48696--48730
16
2.2
16
100
0
70
45
17
25
11
1.81
48775--48998
91
2.5
91
89
2
335
35
12
19
31
1.90

Tables:   1

The End!