Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011499.1 Corchorus capsularis cultivar CVL-1 contig11520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91316

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57--87
16
1.9
16
93
0
53
54
0
9
35
1.33
343--368
13
2.0
13
100
0
52
30
15
0
53
1.42
444--569
67
1.9
67
91
1
209
37
9
19
34
1.84
538--614
37
2.1
37
100
0
154
32
14
15
37
1.88
2308--2345
18
2.1
18
100
0
76
21
0
28
50
1.49
16186--16294
31
3.5
31
84
0
137
22
26
21
30
1.98
51097--51144
21
2.3
21
85
7
62
31
10
8
50
1.66
58231--58301
36
2.0
36
100
0
142
30
11
22
35
1.89
61516--61576
16
3.8
16
72
8
52
63
14
3
18
1.43
64199--64247
2
24.5
2
100
0
98
51
0
48
0
1.00
65365--65505
66
2.1
66
87
5
196
43
21
8
26
1.81
72490--72521
12
2.6
13
85
14
50
18
0
0
81
0.70
85736--85773
11
3.5
11
89
10
51
39
0
2
57
1.12
85969--86032
29
2.1
31
88
5
96
28
17
4
50
1.66
86378--86415
19
2.0
20
85
15
53
28
5
2
63
1.30
86580--86709
22
5.9
22
75
10
122
36
10
16
37
1.82
86581--86708
44
2.9
44
85
2
168
36
10
15
37
1.81
86578--86709
66
2.0
65
81
8
151
35
9
16
37
1.82
86604--86767
22
7.3
22
74
6
98
33
8
17
40
1.80
86932--87122
44
4.4
44
75
6
158
42
9
13
34
1.76
86792--87100
22
14.0
22
71
8
153
40
9
16
34
1.80
87248--87650
22
18.5
22
70
14
176
38
9
14
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87225--87453
22
10.6
22
75
14
124
41
9
12
35
1.76
87614--87661
22
2.2
22
88
3
71
52
4
14
29
1.60
88519--88596
29
2.7
29
84
6
95
17
26
15
39
1.90

Tables:   1

The End!