Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011500.1 Corchorus capsularis cultivar CVL-1 contig11521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16840

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431--479
22
2.2
22
85
0
62
63
12
0
24
1.29
663--704
21
2.0
21
90
0
66
40
16
11
30
1.85
710--746
2
19.0
2
94
5
67
51
0
0
48
1.00
2304--2349
22
2.0
23
87
4
67
13
13
17
56
1.67
4237--4875
22
29.5
22
67
17
175
35
16
9
38
1.80
4175--4325
62
2.4
62
91
0
230
34
13
7
44
1.73
4175--4342
62
2.7
62
86
1
185
35
13
7
43
1.73
4608--4670
23
2.8
23
87
2
92
38
20
4
36
1.74
4982--5032
22
2.4
22
86
3
68
37
13
5
43
1.69
5048--5101
22
2.5
22
84
6
74
37
7
12
42
1.72
5159--5253
37
2.6
37
83
6
138
54
11
20
13
1.69
5373--5438
31
2.1
31
86
5
89
46
1
18
33
1.58
5467--5510
21
2.2
20
87
4
61
43
4
2
50
1.35
8365--8389
2
12.5
2
100
0
50
52
0
0
48
1.00
9810--9848
4
9.8
4
89
10
62
25
0
0
74
0.82
11743--11772
15
2.0
15
93
0
51
20
10
26
43
1.83
14032--14069
19
2.0
19
100
0
76
15
15
10
57
1.64
15111--15153
15
2.7
17
79
17
56
55
20
11
11
1.66
15366--15475
32
3.4
32
83
0
112
37
34
12
15
1.86
15425--15475
16
3.1
17
75
11
52
41
37
7
13
1.74

Tables:   1

The End!