Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011502.1 Corchorus capsularis cultivar CVL-1 contig11523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72949

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
396--425
14
2.1
14
100
0
60
43
20
6
30
1.77
2590--2644
27
2.0
28
96
3
103
7
34
7
50
1.58
5315--5348
18
1.9
17
88
5
50
82
0
14
2
0.79
7021--7058
11
3.5
11
85
10
51
57
2
0
39
1.12
12221--12342
60
2.0
60
98
0
235
36
20
13
29
1.92
12248--12342
29
3.2
29
68
11
93
36
22
14
26
1.93
12228--12367
60
2.3
60
87
2
174
37
19
15
27
1.91
14203--14249
1
47.0
1
82
0
58
0
2
6
91
0.49
14203--14249
16
2.9
16
90
9
69
0
2
6
91
0.49
14214--14249
13
2.8
13
100
0
72
0
0
5
94
0.31
15889--15946
30
1.9
31
89
3
91
53
27
12
6
1.63
15891--15946
16
3.6
16
71
11
53
51
28
12
7
1.65
18877--18962
32
2.7
32
88
0
118
23
25
29
22
1.99
19969--20545
22
26.6
22
68
12
155
36
15
10
38
1.81
20234--20335
23
4.5
23
80
1
91
41
14
7
36
1.75
20251--20357
45
2.4
45
81
6
119
38
14
8
38
1.77
20651--20897
22
11.3
22
72
9
157
33
14
10
41
1.79
20903--20975
22
3.3
22
74
11
60
39
17
4
38
1.69
20943--21007
34
1.9
34
83
0
85
38
15
7
38
1.76
21378--21420
19
2.2
20
84
16
54
62
2
6
27
1.33
21552--21628
37
2.1
36
85
7
102
58
11
15
14
1.63
26146--26224
31
2.5
31
84
15
126
30
15
18
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29981--30048
27
2.5
27
88
4
93
33
25
13
27
1.93
38133--38272
29
4.7
30
71
14
101
35
17
18
29
1.94
38132--38273
60
2.4
60
87
0
203
35
16
19
28
1.94
38311--38478
31
5.6
30
70
13
130
27
19
20
32
1.97
38345--38443
29
3.3
29
71
10
92
27
21
19
32
1.97
38310--38474
60
2.8
60
93
0
276
26
20
20
33
1.97
42758--42794
18
2.1
18
94
0
65
45
2
32
18
1.64
42931--43060
57
2.3
57
100
0
260
24
19
20
36
1.95
47165--47243
31
2.5
31
84
8
106
31
11
20
36
1.88
48807--48846
21
2.0
20
90
5
62
45
5
7
42
1.54
52327--52444
43
2.8
41
80
11
130
33
13
12
39
1.83
52453--52862
47
8.7
47
88
2
581
39
11
9
39
1.74
52453--52862
95
4.3
94
88
2
581
39
11
9
39
1.74
52585--52667
26
3.4
26
62
27
63
38
10
8
42
1.70
63155--63386
122
1.9
123
95
0
421
26
11
8
53
1.64
69122--69156
18
1.9
18
94
0
61
45
2
34
17
1.63
70670--70706
15
2.6
14
88
12
58
32
10
16
40
1.83
71010--71044
14
2.7
13
87
12
54
20
28
11
40
1.87

Tables:   1

The End!