Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011503.1 Corchorus capsularis cultivar CVL-1 contig11524, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87585

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2522--2617
30
3.2
30
82
5
106
17
16
26
39
1.91
2650--2722
30
2.4
30
86
4
94
15
20
28
35
1.93
5231--5314
34
2.5
34
94
1
143
19
8
13
59
1.58
4889--5481
290
2.0
296
90
6
952
17
9
19
53
1.70
9376--9481
6
15.9
7
69
23
61
59
2
0
37
1.12
9380--9479
29
3.2
29
71
19
94
60
3
0
37
1.12
9396--9480
13
6.6
13
74
17
79
62
2
0
35
1.08
11926--11957
15
2.1
15
100
0
64
0
31
0
68
0.90
11926--11963
17
2.2
17
85
0
58
0
28
0
71
0.87
13495--13597
53
1.9
53
98
0
197
39
7
10
41
1.69
14962--15005
18
2.5
17
82
10
52
45
6
0
47
1.29
14995--15040
24
1.9
24
90
0
74
50
0
10
39
1.38
16672--16700
2
14.5
2
100
0
58
51
0
0
48
1.00
19115--19142
11
2.5
11
100
0
56
46
0
25
28
1.53
19267--19317
21
2.3
21
83
6
57
62
0
5
31
1.19
19465--19491
6
4.5
6
100
0
54
51
0
14
33
1.43
28511--28542
16
2.0
16
100
0
64
18
6
18
56
1.62
32587--32632
21
2.2
21
100
0
92
50
8
13
28
1.70
38981--39019
19
2.1
19
100
0
78
25
5
35
33
1.78
42099--42402
87
3.5
87
89
1
477
36
15
5
42
1.70
53284--53388
31
3.5
30
77
12
108
32
25
15
26
1.95
58973--59003
13
2.3
14
94
5
55
41
0
3
54
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59678--59753
23
3.2
24
77
5
91
10
23
0
65
1.23
59779--59842
32
2.0
32
84
6
85
54
3
1
40
1.25
59858--59905
17
2.7
19
75
18
50
50
2
0
47
1.12
77007--77142
18
7.6
17
75
9
85
20
22
16
40
1.91
77037--77142
36
2.9
35
75
10
99
20
19
18
40
1.92
77158--77240
27
3.1
27
96
3
150
15
39
12
32
1.84
85771--85816
20
2.3
20
84
0
65
65
8
2
23
1.32

Tables:   1

The End!