Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011504.1 Corchorus capsularis cultivar CVL-1 contig11525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6986
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35


Found at i:11 original size:2 final size:2

Alignment explanation


    Indices: 5--40  Score: 72
    Period size: 2  Copynumber: 18.0  Consensus size: 2

          1 AATC

                                                                 
          5 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

         41 TACAACCTAA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1233 original size:15 final size:17

Alignment explanation


    Indices: 1202--1233  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1192 AACTCAACTA

                             
       1202 ATATATATATATATCCT
          1 ATATATATATATATCCT

                             
       1219 ATATATA-ATAT-TCCT
          1 ATATATATATATATCCT

       1234 TTTCCTCCAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 2
        0.88            0.00        0.12

Matches are distributed among these distances:
  15    4  0.27
  16    4  0.27
  17    7  0.47

ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47


Consensus pattern (17 bp):   
ATATATATATATATCCT
Done.