Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011506.1 Corchorus capsularis cultivar CVL-1 contig11527, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 27478
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:254 original size:6 final size:6
Alignment explanation
Indices: 243--267 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
233 TCGTAAACAT
243 ATTAAA ATTAAA ATTAAA ATTAAA A
1 ATTAAA ATTAAA ATTAAA ATTAAA A
268 CAATAAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
ATTAAA
Found at i:1709 original size:29 final size:30
Alignment explanation
Indices: 1677--1750 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
1667 ACTTGTAGCG
**
1677 TTTGGACGTTTT-GTTCACTGAACT-TCAAT
1 TTTGGACGTTTTACCTCA-TGAACTCTCAAT
**
1706 TTTGGATATTTTACCTCATGAACTCTCAAT
1 TTTGGACGTTTTACCTCATGAACTCTCAAT
*
1736 TTTTGACGTTTTACC
1 TTTGGACGTTTTACC
1751 CCTCTCAACC
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
29 16 0.44
30 20 0.56
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.46
Consensus pattern (30 bp):
TTTGGACGTTTTACCTCATGAACTCTCAAT
Found at i:3198 original size:2 final size:2
Alignment explanation
Indices: 3191--3234 Score: 54
Period size: 2 Copynumber: 21.0 Consensus size: 2
3181 AGATTATAGA
3191 AT AT AT AT AT AT AT AT AT AT AT AT GACT A- AT AT AT AGT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -A-T AT AT AT AT A-T AT AT
3233 AT
1 AT
3235 CAGACTGTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
1 1 0.03
2 32 0.84
3 4 0.11
4 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:3305 original size:2 final size:2
Alignment explanation
Indices: 3300--3324 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
3290 ATATATGGAC
3300 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
3325 CAAATGAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4100 original size:31 final size:31
Alignment explanation
Indices: 4051--4143 Score: 147
Period size: 31 Copynumber: 3.1 Consensus size: 31
4041 GTTTTCCCCG
* *
4051 TGAACTT-CAAA-TCAAGACATTTTGCGCAT
1 TGAACTTCCAAATTCAAGACATTTTACCCAT
4080 TGAACTTCCAAATTCAAGACATTTTACCCAT
1 TGAACTTCCAAATTCAAGACATTTTACCCAT
4111 TGAACTTCCAAATTCAAGACATTTTACCC-T
1 TGAACTTCCAAATTCAAGACATTTTACCCAT
4141 TGA
1 TGA
4144 CGGAACGGGC
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
29 7 0.12
30 8 0.13
31 45 0.75
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.32
Consensus pattern (31 bp):
TGAACTTCCAAATTCAAGACATTTTACCCAT
Found at i:5716 original size:20 final size:20
Alignment explanation
Indices: 5691--5728 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5681 TTCAAATCGG
5691 GACATTTTACCCACTGAATT
1 GACATTTTACCCACTGAATT
* *
5711 GACATTTTGCCCCCTGAA
1 GACATTTTACCCACTGAA
5729 CTTCACAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (20 bp):
GACATTTTACCCACTGAATT
Found at i:12747 original size:22 final size:22
Alignment explanation
Indices: 12642--12804 Score: 84
Period size: 22 Copynumber: 7.4 Consensus size: 22
12632 CCTTAAAAAC
** *
12642 TTTTGATAAGATTTCTATGAAA
1 TTTTGATAACCTTCCTATGAAA
** * *
12664 TTTTGATAACGATACTATGCAA
1 TTTTGATAACCTTCCTATGAAA
* * *
12686 TTTCT-AAAACCTTCCAATCAAA
1 TTT-TGATAACCTTCCTATGAAA
** *
12708 TTTCAAGAA-CTTCTCTATGAAA
1 TTTTGATAACCTTC-CTATGAAA
12730 TTTTGATAACCTTCCTAT-AGAA
1 TTTTGATAACCTTCCTATGA-AA
* * *
12752 TTTTGATGACCATCC-ACTTAAA
1 TTTTGATAACCTTCCTA-TGAAA
* *
12774 TTTTGATAACC-ACACTATAAAA
1 TTTTGATAACCTTC-CTATGAAA
12796 TTTTGATAA
1 TTTTGATAA
12805 TCTCCATGTG
Statistics
Matches: 108, Mismatches: 24, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
21 7 0.06
22 94 0.87
23 7 0.06
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (22 bp):
TTTTGATAACCTTCCTATGAAA
Found at i:12957 original size:23 final size:23
Alignment explanation
Indices: 12929--12982 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
12919 CAGTATGAAA
* *
12929 TTTGATAAACATTCATATAAAAT
1 TTTGATAAACATCCATATAAAAC
*
12952 TTTGATAAACATCCCTATAAAAC
1 TTTGATAAACATCCATATAAAAC
12975 TTTGATAA
1 TTTGATAA
12983 CCTCTTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (23 bp):
TTTGATAAACATCCATATAAAAC
Found at i:13351 original size:64 final size:66
Alignment explanation
Indices: 13230--13351 Score: 151
Period size: 66 Copynumber: 1.9 Consensus size: 66
13220 CCACACTCTA
* * **
13230 AAATTTTGATAATAACATTATGAAATTTCGATAACCTTCTAATGAAATATTGCTAACCTCTCTAT
1 AAATTCTGATAATAACACTATGAAATTTCGATAACCTTCTAATGAAATATTAATAACCTCTCTAT
13295 G
66 G
* * *
13296 AAATTCTGATAATCATACTATGAAATTT-GA-AACCTTC-ATATGAAATTTTAATAACC
1 AAATTCTGATAATAACACTATGAAATTTCGATAACCTTCTA-ATGAAATATTAATAACC
13352 ACAATATGAA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
63 1 0.02
64 21 0.44
65 2 0.04
66 24 0.50
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (66 bp):
AAATTCTGATAATAACACTATGAAATTTCGATAACCTTCTAATGAAATATTAATAACCTCTCTAT
G
Found at i:13360 original size:64 final size:66
Alignment explanation
Indices: 13230--13362 Score: 146
Period size: 64 Copynumber: 2.0 Consensus size: 66
13220 CCACACTCTA
* * ** * **
13230 AAATTTTGATAATAACATTATGAAATTTCGATAACCTTCTAATGAAATATTGCTAACCTCTCTAT
1 AAATTCTGATAATAACACTATGAAATTTCGATAACCTTCTAATGAAATATTAATAACCACAATAT
13295 G
66 G
* * *
13296 AAATTCTGATAATCATACTATGAAATTT-GA-AACCTTC-ATATGAAATTTTAATAACCACAATA
1 AAATTCTGATAATAACACTATGAAATTTCGATAACCTTCTA-ATGAAATATTAATAACCACAATA
13358 TG
65 TG
13360 AAA
1 AAA
13363 AATTTTCATA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
63 1 0.02
64 29 0.52
65 2 0.04
66 24 0.43
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.35
Consensus pattern (66 bp):
AAATTCTGATAATAACACTATGAAATTTCGATAACCTTCTAATGAAATATTAATAACCACAATAT
G
Found at i:13477 original size:22 final size:22
Alignment explanation
Indices: 13247--13778 Score: 190
Period size: 22 Copynumber: 23.9 Consensus size: 22
13237 GATAATAACA
*
13247 TTATGAAATTTCGATAACCTTC
1 TTATGAAATTTTGATAACCTTC
* * *
13269 TAATGAAATATTGCTAACC-TC
1 TTATGAAATTTTGATAACCTTC
* * *
13290 TCTATGAAATTCTGATAATCATAC
1 T-TATGAAATTTTGATAA-CCTTC
13314 -TATGAAA-TTTGA-AACCTTC
1 TTATGAAATTTTGATAACCTTC
* * *
13333 ATATGAAATTTTAATAACC-AC
1 TTATGAAATTTTGATAACCTTC
* *
13354 AATATGAAAAATTTTCATAA-CTTC
1 -TTATG--AAATTTTGATAACCTTC
*
13378 ATT-GGAAATTTTGATAACC-TC
1 -TTATGAAATTTTGATAACCTTC
* *
13399 GTTTTAAAATTTTGATAACCTT-
1 -TTATGAAATTTTGATAACCTTC
* * * * *
13421 TCTATGAAAATTTGATTAGCATA
1 T-TATGAAATTTTGATAACCTTC
13444 TTATG-AATTTTGATAACCTTC
1 TTATGAAATTTTGATAACCTTC
*
13465 TTATGAAATTTTGGA-AATCTGATC
1 TTATGAAATTTT-GATAACCT--TC
* *
13489 TCTATGAATTTTTGATAA-CTAC
1 T-TATGAAATTTTGATAACCTTC
* ** * *
13511 TCTATGATATTTTGATTGCTTTG
1 T-TATGAAATTTTGATAACCTTC
*
13534 TGATGAAATTTTGATAA--TTAC
1 TTATGAAATTTTGATAACCTT-C
* *
13555 --ACTAAAATTTTGATAACGTTC
1 TTA-TGAAATTTTGATAACCTTC
* * *
13576 GTATGAAATTTAGATTTTTCTAACATTAC
1 TTATGAAATTTTGA------TAACCTT-C
* *
13605 -TATGAAATTTTGGTAACC-AC
1 TTATGAAATTTTGATAACCTTC
* * *
13625 ACTATGAAATCTTTGAGAACCTCC
1 -TTATGAAAT-TTTGATAACCTTC
* *
13649 TTATAAAATTTTGATAACC-AC
1 TTATGAAATTTTGATAACCTTC
* *
13670 ACTATGAAATTCTGATAACC-TC
1 -TTATGAAATTTTGATAACCTTC
* * *
13692 GCTATGGAATTTTGATAACCTCC
1 -TTATGAAATTTTGATAACCTTC
* *
13715 CTATGAAATTTTGATAACAAC-AC
1 TTATGAAATTTTGATAAC--CTTC
*
13738 -TATGAAATTTTGATAACTTTC
1 TTATGAAATTTTGATAACCTTC
** *
13759 CCATGAAATTTTAATAACCT
1 TTATGAAATTTTGATAACCT
13779 AATCCATATG
Statistics
Matches: 386, Mismatches: 79, Indels: 90
0.70 0.14 0.16
Matches are distributed among these distances:
19 4 0.01
20 25 0.06
21 47 0.12
22 229 0.59
23 27 0.07
24 24 0.06
25 12 0.03
28 17 0.04
29 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (22 bp):
TTATGAAATTTTGATAACCTTC
Found at i:13705 original size:44 final size:43
Alignment explanation
Indices: 13604--13853 Score: 207
Period size: 44 Copynumber: 5.6 Consensus size: 43
13594 TCTAACATTA
* *
13604 CTATGAAATTTTGGTAACCACACTATGAAATCTTTGAGAACCTC
1 CTATGAAATTTTGATAACCACACTATGAAAT-TTTGATAACCTC
* *
13648 CTTATAAAATTTTGATAACCACACTATGAAATTCTGATAACCTC
1 C-TATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTC
* * * **
13692 GCTATGGAATTTTGATAACCTCCCTATGAAATTTTGATAACAAC
1 -CTATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTC
** * *
13736 ACTATGAAATTTTGATAACTTTC-CCATGAAATTTTAATAACCTAATC
1 -CTATGAAATTTTGATAAC-CACACTATGAAATTTTGATAACC---TC
* * * * *
13783 CATATGAAAATTTAATAACCACAGTGTGAAATTTTGATTACCT-
1 C-TATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTC
* *
13826 CAATGTAAAATTTTGATAATCACACTAT
1 CTATG--AAATTTTGATAACCACACTAT
13854 AAAAGATATT
Statistics
Matches: 163, Mismatches: 33, Indels: 20
0.75 0.15 0.09
Matches are distributed among these distances:
42 3 0.02
43 1 0.01
44 96 0.59
45 31 0.19
46 2 0.01
47 30 0.18
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (43 bp):
CTATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTC
Found at i:13728 original size:66 final size:65
Alignment explanation
Indices: 13603--13844 Score: 234
Period size: 66 Copynumber: 3.6 Consensus size: 65
13593 TTCTAACATT
* * * * *
13603 ACTATGAAATTTTGGTAACCACACTATGAAATCTTTGAGAACCTCCTTATAAAATTTTGATAACC
1 ACTATGAAATTTTGATAACCTC-CTATGAAAT-TTTGATAACCTCCATATGAAATTTTGATAACC
13668 AC
64 AC
* * * *
13670 ACTATGAAATTCTGATAACCTCGCTATGGAATTTTGATAACCTCCCTATGAAATTTTGATAACAA
1 ACTATGAAATTTTGATAACCTC-CTATGAAATTTTGATAACCTCCATATGAAATTTTGATAACCA
13735 C
65 C
* * * * *
13736 ACTATGAAATTTTGATAACTTTCCCATGAAATTTTAATAACCTAATCCATATGAAAATTTAATAA
1 ACTATGAAATTTTGATAAC-CTCCTATGAAATTTTGATAACC---TCCATATGAAATTTTGATAA
13801 CCAC
62 CCAC
* * * *
13805 AGTGTGAAATTTTGATTACCT-CAATGTAAAATTTTGATAA
1 ACTATGAAATTTTGATAACCTCCTATG--AAATTTTGATAA
13845 TCACACTATA
Statistics
Matches: 145, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
66 64 0.44
67 33 0.23
68 1 0.01
69 47 0.32
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (65 bp):
ACTATGAAATTTTGATAACCTCCTATGAAATTTTGATAACCTCCATATGAAATTTTGATAACCAC
Found at i:14405 original size:6 final size:6
Alignment explanation
Indices: 14394--14419 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14384 AGTGATCCTA
14394 TGATTT TGATTT TGATTT TGATTT TG
1 TGATTT TGATTT TGATTT TGATTT TG
14420 TTGTCTCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.19, T:0.65
Consensus pattern (6 bp):
TGATTT
Found at i:14477 original size:22 final size:22
Alignment explanation
Indices: 14445--14494 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
14435 TATCAAAAAA
14445 TTTCATAGTGAGATTATCAAAC
1 TTTCATAGTGAGATTATCAAAC
* *
14467 TTTCATCGTGAGATTATCAAGC
1 TTTCATAGTGAGATTATCAAAC
14489 TTTCAT
1 TTTCAT
14495 GAGGAAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (22 bp):
TTTCATAGTGAGATTATCAAAC
Found at i:14599 original size:22 final size:22
Alignment explanation
Indices: 14571--14730 Score: 76
Period size: 22 Copynumber: 7.3 Consensus size: 22
14561 GTTTGGTAAA
*
14571 CAAAATTTCATAATGAGATTA-
1 CAAAATTTCATAAGGAGATTAT
* *
14592 CAAAAATTCCATAAGGAGGTTAT
1 C-AAAATTTCATAAGGAGATTAT
** * *
14615 CAAAATTTCAT-AGTCTGGTCA-
1 CAAAATTTCATAAG-GAGATTAT
* * *
14636 CCAAATTTTATAGGGAGATTAT
1 CAAAATTTCATAAGGAGATTAT
* * ** * * *
14658 AAAAAATTCATACTGTGAATAC
1 CAAAATTTCATAAGGAGATTAT
* * *
14680 CAAAATTTCATATGAAGGTTAT
1 CAAAATTTCATAAGGAGATTAT
*
14702 CAAAATTTCATAGAGTAG-TTAT
1 CAAAATTTCATA-AGGAGATTAT
14724 CAAAATT
1 CAAAATT
14731 ATAGGGATTA
Statistics
Matches: 99, Mismatches: 34, Indels: 11
0.69 0.24 0.08
Matches are distributed among these distances:
21 15 0.15
22 80 0.81
23 4 0.04
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (22 bp):
CAAAATTTCATAAGGAGATTAT
Found at i:15249 original size:165 final size:167
Alignment explanation
Indices: 15037--15403 Score: 384
Period size: 165 Copynumber: 2.2 Consensus size: 167
15027 TTCTAAGAGG
* * *** ** * **
15037 CCTAAAACCTCAACTTCCCAATTTAGCACGTTTGTACAAAAAACGTTGTTC-TCGGAAAA-GCAC
1 CCTAAAACCTCAACTTCACAATTTTGTGTGTTTGTACGCAGAACGTTGTTCTTAAGAAAATG--C
* * *** *
15100 TCATTCCAAATACATTATTTGTGAAATCAACGCTCAAATGTTGTGTTTTAGAGTAAGTA-AGCTC
64 TCATTCCAAATACATTATTTGTGAAACCAACACTCAAATACCGTGTTTCAGAGTAAGTAGAGCTC
15164 ATTGGAAAGTGGGCTTGCCAAA-AAAA-ATTTCTTCAAAA
129 ATTGGAAAGT-GGCTTGCCAAACAAAAGATTTCTTCAAAA
* * * ** * *
15202 CCTAAAACTTGAATTTGTCAATTTTGTGTTTTTGTACGCAGAACGTTGTTCTTAAGAAAATGTTC
1 CCTAAAACCTCAACTTCACAATTTTGTGTGTTTGTACGCAGAACGTTGTTCTTAAGAAAATGCTC
* ** * * * *
15267 ATTCCGAATATGTTATTTGTGTAACCAACATTCAGATACCGTGTTTCAGAGTTAGTAGAGCTCAT
66 ATTCCAAATACATTATTTGTGAAACCAACACTCAAATACCGTGTTTCAGAGTAAGTAGAGCTCAT
* *
15332 TGGAAAGTGGCTTGCCAAACAAAAGGTTTCTTCAAAG
131 TGGAAAGTGGCTTGCCAAACAAAAGATTTCTTCAAAA
15369 CCTAAAACCTCAACTTCACAATTTTGTGTGTTTGT
1 CCTAAAACCTCAACTTCACAATTTTGTGTGTTTGT
15404 GCACCAAACA
Statistics
Matches: 160, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
165 95 0.59
166 25 0.16
167 40 0.25
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (167 bp):
CCTAAAACCTCAACTTCACAATTTTGTGTGTTTGTACGCAGAACGTTGTTCTTAAGAAAATGCTC
ATTCCAAATACATTATTTGTGAAACCAACACTCAAATACCGTGTTTCAGAGTAAGTAGAGCTCAT
TGGAAAGTGGCTTGCCAAACAAAAGATTTCTTCAAAA
Found at i:16537 original size:17 final size:17
Alignment explanation
Indices: 16511--16547 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
16501 TCCCCCTCAT
16511 GGTACCAGGTAGCATGA
1 GGTACCAGGTAGCATGA
* *
16528 GGTACTAGGTAGTATGA
1 GGTACCAGGTAGCATGA
16545 GGT
1 GGT
16548 GCTGGATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.38, T:0.24
Consensus pattern (17 bp):
GGTACCAGGTAGCATGA
Found at i:19973 original size:19 final size:20
Alignment explanation
Indices: 19955--19990 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
19945 AATTAATTAT
19955 TTTA-ATATTA-ATTTTTTA
1 TTTATATATTATATTTTTTA
19973 TTTATATATTATATTTTT
1 TTTATATATTATATTTTT
19991 ACTTTGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.25
19 6 0.38
20 6 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTATATATTATATTTTTTA
Found at i:27289 original size:16 final size:17
Alignment explanation
Indices: 27270--27308 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
27260 TGTTTTGATT
27270 AAAAAATAT-TTTTTTA
1 AAAAAATATATTTTTTA
27286 AAAAAATATATTTTTTA
1 AAAAAATATATTTTTTA
27303 AAAAAA
1 AAAAAA
27309 ATTGGGTGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAAAATATATTTTTTA
Done.