Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011508.1 Corchorus capsularis cultivar CVL-1 contig11529, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4419
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31


Found at i:1392 original size:27 final size:27

Alignment explanation


    Indices: 1362--1440  Score: 86
    Period size: 27  Copynumber: 2.9  Consensus size: 27

       1352 GCATTGGGGT

                      *                
       1362 CGCCCAAGGGTATTTTGGTCATTTTCA
          1 CGCCCAAGGGCATTTTGGTCATTTTCA

                  *                  * 
       1389 CGCCCAGGGGCATTTTGGTCATTTTTA
          1 CGCCCAAGGGCATTTTGGTCATTTTCA

             * * **         *        
       1416 CACTCGGGGGCATTTTAGTCATTTT
          1 CGCCCAAGGGCATTTTGGTCATTTT

       1441 TAAAGTTCAC


Statistics
Matches: 45,  Mismatches: 7, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  27   45  1.00

ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38


Consensus pattern (27 bp):   
CGCCCAAGGGCATTTTGGTCATTTTCA
Done.