Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011512.1 Corchorus capsularis cultivar CVL-1 contig11533, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9507

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2289--2573
43
6.5
43
84
6
358
31
21
21
24
1.98
2289--2573
87
3.3
86
84
6
367
31
21
21
24
1.98
2312--2573
134
2.0
134
89
1
400
32
20
21
24
1.98
2573--2794
38
5.8
38
81
3
266
26
21
21
30
1.99
2589--2806
115
1.9
115
85
0
301
26
22
21
29
1.99
4416--4453
14
2.7
14
84
12
51
34
13
7
44
1.72
6636--6726
30
3.0
30
100
0
182
29
26
17
26
1.98
8286--8359
36
2.1
36
92
0
121
27
20
8
44
1.79
8297--8377
36
2.4
33
82
13
103
27
23
6
43
1.77
8377--8964
36
16.6
36
85
3
712
25
21
10
42
1.84
8377--8956
107
5.5
104
83
7
602
25
21
10
42
1.84
8961--9059
11
8.5
11
83
9
117
7
26
10
56
1.58
8963--9063
36
2.8
35
85
8
141
6
25
9
57
1.56
8961--9059
24
4.2
24
87
6
141
7
26
10
56
1.58
9117--9203
40
2.2
40
82
0
102
29
10
11
48
1.73

Tables:   1

The End!