Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011515.1 Corchorus capsularis cultivar CVL-1 contig11536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64938

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19004--19076
16
4.6
16
68
13
51
47
28
12
10
1.75
19227--19306
32
2.5
32
87
2
108
41
38
7
12
1.71
19248--19308
16
3.9
15
79
10
68
39
39
6
14
1.72
24372--24444
16
4.6
16
75
0
65
6
13
41
38
1.72
24372--24444
32
2.3
32
87
0
101
6
13
41
38
1.72
33791--33826
19
1.9
18
88
5
54
52
0
27
19
1.46
41707--41737
7
4.3
7
95
4
53
38
0
12
48
1.42
42324--42959
22
29.4
22
73
11
365
53
4
22
19
1.61
42435--42774
153
2.2
151
91
2
536
54
5
21
19
1.63
42353--42959
153
4.0
156
81
8
535
53
4
22
19
1.62
42563--42910
42
8.1
43
71
17
185
53
4
22
20
1.63
42861--42932
15
4.9
15
68
14
60
59
1
19
19
1.45
42886--42959
15
5.1
14
73
16
62
60
1
21
16
1.42
42905--43028
7
17.7
7
68
9
56
56
3
23
16
1.55
42906--43080
69
2.5
67
80
12
185
55
3
22
18
1.58
42906--43071
35
4.8
34
79
12
167
56
3
21
18
1.57
43095--43161
21
3.1
21
72
18
66
50
4
16
28
1.64
45268--45295
2
14.0
2
100
0
56
50
0
0
50
1.00
46961--47096
70
1.9
70
93
0
236
20
11
18
50
1.77
49270--49306
18
2.1
18
100
0
74
37
5
0
56
1.22
49275--49335
32
1.9
32
82
0
77
36
6
1
55
1.36
49923--49976
24
2.2
26
80
12
60
51
1
3
42
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50109--50157
21
2.3
21
92
0
80
32
22
8
36
1.84
53787--53949
37
4.4
37
81
3
166
29
17
34
19
1.94
56044--56116
33
2.2
33
82
5
83
24
28
31
15
1.95
56064--56143
33
2.4
33
91
0
124
18
38
28
13
1.89
62993--63028
10
3.6
10
100
0
72
50
19
8
22
1.74
63971--63997
6
4.5
6
100
0
54
29
0
14
55
1.40
64307--64369
25
2.4
27
81
7
76
57
6
14
22
1.60
64311--64375
26
2.7
24
84
11
87
50
6
15
27
1.67

Tables:   1

The End!