Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011522.1 Corchorus capsularis cultivar CVL-1 contig11543, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54535

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24223--25639
218
6.5
218
87
2
1963
34
7
22
36
1.82
24223--25639
435
3.3
435
88
2
2053
34
7
22
36
1.82
26097--27157
218
4.9
217
87
2
1475
36
20
7
34
1.81
26097--27157
435
2.4
432
89
3
1590
36
20
7
34
1.81
27298--27322
9
2.8
9
100
0
50
0
12
68
20
1.21
28541--28582
22
1.9
22
95
0
75
40
28
19
11
1.87
29737--29994
126
2.0
128
88
6
380
50
2
9
38
1.48
30754--30783
16
1.9
16
93
6
53
20
6
13
60
1.55
31166--31198
15
2.2
15
94
0
57
27
30
15
27
1.96
35669--35755
35
2.7
32
84
8
106
25
12
8
54
1.65
35728--35801
38
1.9
39
83
2
96
31
12
5
51
1.61
39120--39144
5
5.0
5
100
0
50
20
40
20
20
1.92
45476--45555
30
2.7
30
88
0
115
17
25
21
36
1.95
47938--47970
6
5.5
6
92
0
57
51
15
0
33
1.43

Tables:   1

The End!