genome.fa.s11525.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011525.1 Corchorus capsularis cultivar CVL-1 contig11546, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19987

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6725--6819	46	2.0	47	91	2	156	60	10	21	8	1.56
7859--7992	34	3.9	33	78	12	144	32	17	20	29	1.95
7857--8001	35	4.1	35	82	2	184	35	16	19	28	1.94
7877--8114	127	1.9	126	81	4	291	33	17	20	28	1.95
8058--8127	35	2.0	35	81	10	81	31	14	27	27	1.95
8202--8521	91	3.6	89	84	5	405	25	17	27	30	1.97
8202--8570	182	2.1	177	80	4	407	25	17	26	30	1.97
9217--9250	14	2.4	14	95	0	59	23	11	14	50	1.76
9389--9429	20	2.0	20	90	0	64	29	9	21	39	1.86
11785--11813	2	14.5	2	100	0	58	48	0	0	51	1.00
12627--12880	48	5.3	48	88	2	366	12	25	23	38	1.89
12624--12880	97	2.7	96	90	1	406	12	26	22	38	1.89
12808--12953	73	2.0	73	89	2	222	10	26	19	43	1.84
12945--12991	23	2.0	23	91	0	76	10	31	31	25	1.90
12968--13228	48	5.5	48	77	8	264	13	25	24	36	1.92
12968--13228	96	2.8	94	84	3	310	13	25	24	36	1.92
17001--17057	19	2.9	20	68	5	53	56	0	21	22	1.43
17240--17423	35	5.2	35	81	8	212	44	7	22	25	1.79
17240--17417	69	2.5	72	84	5	218	45	7	21	25	1.77
17519--17793	35	7.8	35	92	2	442	49	10	11	28	1.72
17519--17793	106	2.6	105	93	1	460	49	10	11	28	1.72
17622--17720	20	5.4	20	62	30	51	50	10	12	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17519--17776	141	1.8	141	96	0	480	50	10	10	28	1.71
17519--17835	141	2.2	139	89	4	422	48	11	12	27	1.75
17849--17911	11	5.7	11	92	0	108	57	7	26	7	1.55
17927--18163	36	6.6	35	88	5	291	43	10	21	24	1.83
17927--18202	72	3.8	71	85	7	324	44	10	21	23	1.82
17927--18190	108	2.4	106	85	5	341	45	9	22	23	1.81
18224--18326	32	3.1	32	75	13	109	45	6	19	28	1.75
18211--18342	36	3.8	35	77	11	137	45	6	18	28	1.75

Tables:   1

The End!