Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011526.1 Corchorus capsularis cultivar CVL-1 contig11547, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29000

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82--114
1
33.0
1
100
0
66
100
0
0
0
0.00
832--906
16
4.7
16
83
6
73
6
17
36
40
1.76
803--873
31
2.2
32
80
7
74
5
15
40
38
1.71
1674--1723
6
8.8
6
76
12
52
4
16
50
30
1.63
1674--1721
17
2.9
17
87
3
62
4
16
47
31
1.65
3274--3311
20
1.9
19
89
5
58
78
0
10
10
0.95
4629--4696
32
2.1
33
89
8
104
25
10
17
47
1.79
11508--11745
111
2.2
110
89
4
356
22
22
22
32
1.98
11776--11890
29
3.7
29
73
16
95
27
28
15
27
1.96
11753--11898
65
2.4
60
86
6
195
31
26
17
24
1.97
12142--12371
116
2.0
116
97
0
433
23
19
16
40
1.91
12346--12501
49
3.2
48
82
7
176
25
9
25
40
1.85
12578--12687
42
2.5
44
79
4
125
30
24
13
30
1.94
12871--12959
37
2.4
37
90
0
133
17
25
19
37
1.94
12871--12970
37
2.7
36
86
6
128
18
26
20
36
1.95
13001--13276
45
6.2
46
80
7
309
26
24
19
30
1.98
13026--13267
134
1.8
134
86
3
353
27
25
16
29
1.97
13572--13691
36
3.3
36
77
10
120
27
22
22
27
1.99
13630--13699
36
1.9
36
85
0
95
27
27
21
24
1.99
13776--13872
46
2.1
47
86
1
133
27
24
16
30
1.96
16353--16384
15
2.1
15
94
0
55
50
12
21
15
1.77
21791--21841
21
2.5
20
84
9
66
56
1
37
3
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26506--26540
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!