Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011527.1 Corchorus capsularis cultivar CVL-1 contig11548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40275

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--862
2
12.5
2
100
0
50
52
0
0
48
1.00
1324--1367
21
2.2
20
83
4
52
56
4
6
31
1.46
4737--4802
31
2.1
31
91
5
107
27
21
4
46
1.70
5114--5151
19
2.0
20
85
15
53
28
5
2
63
1.30
5317--5405
22
4.0
22
76
5
90
37
11
15
35
1.84
5319--5449
22
5.9
22
73
10
61
35
10
16
37
1.83
5409--5456
22
2.2
22
84
0
60
27
6
22
43
1.77
5492--5550
22
2.7
22
79
10
66
37
10
16
35
1.83
5567--6578
22
46.9
21
65
19
197
40
9
15
35
1.79
5680--5744
21
2.8
23
86
11
89
44
9
12
33
1.74
5979--6029
19
2.6
20
90
6
86
45
11
17
25
1.83
6209--6266
23
2.5
23
91
5
91
37
5
15
41
1.70
6057--6310
128
2.0
127
79
3
278
41
9
14
34
1.78
9441--9485
23
2.0
23
91
8
76
37
13
35
13
1.84
21261--21293
3
11.0
3
100
0
66
33
0
0
66
0.92
23549--23652
31
3.4
31
86
7
158
52
0
3
42
1.26
23548--23650
11
9.8
11
69
10
63
52
0
3
42
1.26
25923--26076
77
2.0
77
100
0
308
31
25
14
28
1.95
28184--28229
23
2.0
23
91
8
76
26
8
19
45
1.79
28387--28580
60
3.2
60
68
13
180
32
11
19
36
1.87
28378--28621
122
2.0
122
99
0
479
31
11
18
38
1.86
33211--33248
19
2.1
19
85
5
51
21
31
10
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37096--37137
23
2.0
20
90
9
57
42
23
2
30
1.67
39758--39813
6
9.7
6
78
7
53
80
0
14
5
0.88
39758--39820
23
2.7
23
80
2
72
79
1
14
4
0.97

Tables:   1

The End!