Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011529.1 Corchorus capsularis cultivar CVL-1 contig11550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18939

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20--54
2
17.5
2
100
0
70
48
0
0
51
1.00
1764--2405
70
9.2
69
87
1
838
28
19
27
25
1.99
1764--2405
139
4.6
139
89
3
855
28
19
27
25
1.99
2913--2994
41
2.0
41
85
0
110
34
15
15
34
1.90
3277--3351
10
7.4
10
84
11
75
2
17
0
80
0.84
3282--3351
30
2.4
29
85
7
88
2
17
0
80
0.84
3962--4016
19
3.0
19
79
10
53
1
18
3
76
1.02
4551--4651
45
2.3
44
91
3
175
36
20
7
34
1.82
5081--5225
75
1.9
75
91
0
236
28
20
11
40
1.87
5366--5402
3
12.3
3
100
0
74
32
0
0
67
0.91
5416--5548
66
2.0
66
98
0
257
46
13
9
30
1.75
7457--7488
6
5.5
6
96
3
57
56
12
0
31
1.37
7485--7519
13
2.7
13
95
0
61
60
8
11
20
1.57
8392--8419
10
2.8
10
100
0
56
21
10
21
46
1.81
10614--10670
21
2.7
21
71
10
53
14
21
49
15
1.80
14121--14218
50
2.0
49
80
6
108
52
7
13
27
1.66
18632--18727
39
2.5
38
80
11
106
37
15
14
32
1.88

Tables:   1

The End!