Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011531.1 Corchorus capsularis cultivar CVL-1 contig11552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31347

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10588--11217
40
16.9
40
70
17
317
54
3
21
20
1.60
10750--10815
33
2.0
32
88
2
96
54
3
21
21
1.58
10751--10804
15
3.4
15
78
14
54
55
1
20
22
1.53
10866--10927
32
1.9
32
83
6
81
56
8
20
14
1.64
10600--11109
112
4.6
111
83
6
583
53
3
21
20
1.61
10979--11063
32
2.7
31
85
1
89
55
3
24
16
1.57
10867--11178
144
2.2
144
84
2
387
55
3
21
18
1.57
11016--11063
16
3.0
16
79
11
62
56
4
20
18
1.58
11117--11171
15
3.6
15
80
4
65
58
0
25
16
1.38
11005--11214
112
1.9
112
91
2
350
56
2
21
19
1.55
10935--11218
71
4.0
72
74
9
211
54
3
22
19
1.58
10750--11223
255
1.9
256
84
4
652
53
3
21
20
1.60
11181--11302
52
2.3
52
85
2
156
48
4
17
29
1.68
11180--11655
242
2.0
242
97
0
898
49
5
16
28
1.69
11423--11545
52
2.4
52
83
5
151
47
5
18
28
1.72
12919--12974
11
5.1
11
74
6
51
19
8
14
57
1.63
15110--15233
62
2.0
62
96
3
232
25
23
15
35
1.94
16341--16438
30
3.3
30
80
12
112
36
28
15
19
1.92
22751--22777
6
4.5
6
100
0
54
55
14
0
29
1.40
23708--23732
10
2.5
10
100
0
50
24
8
20
48
1.76
24275--24340
28
2.4
28
100
0
132
59
15
12
13
1.62

Tables:   1

The End!