Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011534.1 Corchorus capsularis cultivar CVL-1 contig11555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7334

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1750--1775
7
3.7
7
100
0
52
0
11
88
0
0.52
2710--2738
14
2.0
15
93
6
51
44
27
13
13
1.82
2817--2930
32
3.6
32
87
0
165
51
30
11
6
1.62
2817--2930
16
7.1
16
80
4
122
51
30
11
6
1.62
3078--3216
31
4.4
31
88
1
197
38
35
10
16
1.82
3084--3194
16
7.1
16
78
11
131
37
33
10
18
1.85
3757--3790
15
2.3
15
94
0
59
85
0
14
0
0.60
3757--3794
20
1.9
19
89
5
58
84
0
15
0
0.63
4115--4206
16
5.8
16
79
2
105
6
10
29
53
1.61
4102--4222
32
3.8
32
81
4
138
6
10
30
52
1.62
5332--5369
3
12.7
3
100
0
76
34
0
0
65
0.93

Tables:   1

The End!